Hb_001500_090

Information

Type -
Description -
Location Contig1500: 98725-100274
Sequence    

Annotation

kegg
ID rcu:RCOM_1437510
description hypothetical protein
nr
ID XP_002512623.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FFD0
description Putative auxin efflux carrier component 8 OS=Arabidopsis thaliana GN=PIN8 PE=3 SV=2
trembl
ID B9RFV4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437510 PE=4 SV=1
Gene Ontology
ID GO:0005783
description auxin efflux carrier component 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001500_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000193_320 0.0594258536 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002750_030 0.0611541301 - - PREDICTED: protein IRX15-LIKE-like [Populus euphratica]
4 Hb_000776_090 0.0622983765 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
5 Hb_000836_640 0.0647572472 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
6 Hb_009476_080 0.0661871176 - - BnaA03g18920D [Brassica napus]
7 Hb_001477_050 0.0682368382 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
8 Hb_005056_040 0.0729948739 - - hypothetical protein POPTR_0007s14730g [Populus trichocarpa]
9 Hb_000173_140 0.0756341922 - - EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]
10 Hb_002078_180 0.077396495 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
11 Hb_005686_040 0.0775606118 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005523_030 0.078099043 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
13 Hb_004920_150 0.0803106525 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001935_060 0.0804163535 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
15 Hb_000162_010 0.0804292873 - - PREDICTED: dirigent protein 23 [Jatropha curcas]
16 Hb_001051_060 0.0808192887 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
17 Hb_000086_490 0.0818550345 - - cellulose synthase [Populus tomentosa]
18 Hb_000334_030 0.0829868279 - - conserved hypothetical protein [Ricinus communis]
19 Hb_050514_030 0.0843133152 - - PREDICTED: protein trichome birefringence-like 34 [Jatropha curcas]
20 Hb_015807_090 0.0846068422 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]

Gene co-expression network

sample Hb_001500_090 Hb_001500_090 Hb_000193_320 Hb_000193_320 Hb_001500_090--Hb_000193_320 Hb_002750_030 Hb_002750_030 Hb_001500_090--Hb_002750_030 Hb_000776_090 Hb_000776_090 Hb_001500_090--Hb_000776_090 Hb_000836_640 Hb_000836_640 Hb_001500_090--Hb_000836_640 Hb_009476_080 Hb_009476_080 Hb_001500_090--Hb_009476_080 Hb_001477_050 Hb_001477_050 Hb_001500_090--Hb_001477_050 Hb_002078_180 Hb_002078_180 Hb_000193_320--Hb_002078_180 Hb_000193_320--Hb_000776_090 Hb_000193_320--Hb_009476_080 Hb_000086_490 Hb_000086_490 Hb_000193_320--Hb_000086_490 Hb_015807_090 Hb_015807_090 Hb_000193_320--Hb_015807_090 Hb_002750_030--Hb_000836_640 Hb_000162_010 Hb_000162_010 Hb_002750_030--Hb_000162_010 Hb_002750_030--Hb_001477_050 Hb_005056_040 Hb_005056_040 Hb_002750_030--Hb_005056_040 Hb_064047_020 Hb_064047_020 Hb_002750_030--Hb_064047_020 Hb_000776_090--Hb_000836_640 Hb_005523_030 Hb_005523_030 Hb_000776_090--Hb_005523_030 Hb_000776_090--Hb_000086_490 Hb_002739_140 Hb_002739_140 Hb_000776_090--Hb_002739_140 Hb_050514_030 Hb_050514_030 Hb_000776_090--Hb_050514_030 Hb_000776_090--Hb_000162_010 Hb_000836_640--Hb_001477_050 Hb_000836_640--Hb_000162_010 Hb_001307_180 Hb_001307_180 Hb_000836_640--Hb_001307_180 Hb_000836_640--Hb_005523_030 Hb_009476_080--Hb_002078_180 Hb_009476_080--Hb_015807_090 Hb_003747_160 Hb_003747_160 Hb_009476_080--Hb_003747_160 Hb_002835_360 Hb_002835_360 Hb_009476_080--Hb_002835_360 Hb_005686_040 Hb_005686_040 Hb_009476_080--Hb_005686_040 Hb_001051_060 Hb_001051_060 Hb_009476_080--Hb_001051_060 Hb_001477_050--Hb_005056_040 Hb_024074_030 Hb_024074_030 Hb_001477_050--Hb_024074_030 Hb_000037_150 Hb_000037_150 Hb_001477_050--Hb_000037_150 Hb_001477_050--Hb_000162_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0377099 0.0623966 1.30619 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0297186 0.836114

CAGE analysis