Hb_002739_140

Information

Type -
Description -
Location Contig2739: 132668-134253
Sequence    

Annotation

kegg
ID rcu:RCOM_0112060
description hypothetical protein
nr
ID XP_012074753.1
description PREDICTED: protein TPX2 [Jatropha curcas]
swissprot
ID F4I2H7
description Protein TPX2 OS=Arabidopsis thaliana GN=TPX2 PE=1 SV=1
trembl
ID B9SR84
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0112060 PE=4 SV=1
Gene Ontology
ID GO:0005819
description tpx2 (targeting protein for xklp2) family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28648: 133326-133771
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002739_140 0.0 - - PREDICTED: protein TPX2 [Jatropha curcas]
2 Hb_004920_150 0.0475412409 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000776_090 0.0488272382 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
4 Hb_003972_070 0.0533627 - - PREDICTED: cytochrome P450 85A1-like [Citrus sinensis]
5 Hb_038927_020 0.0600681266 - - PREDICTED: rac-like GTP-binding protein RAC13 [Cucumis melo]
6 Hb_010488_050 0.06086913 transcription factor TF Family: LIM hypothetical protein JCGZ_14428 [Jatropha curcas]
7 Hb_050514_030 0.064723295 - - PREDICTED: protein trichome birefringence-like 34 [Jatropha curcas]
8 Hb_001935_060 0.0655031605 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
9 Hb_002311_010 0.0655192361 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
10 Hb_010166_010 0.0668676951 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
11 Hb_007281_010 0.0693110575 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
12 Hb_000162_010 0.07648557 - - PREDICTED: dirigent protein 23 [Jatropha curcas]
13 Hb_001014_180 0.0778035351 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
14 Hb_001377_220 0.078576238 - - dopamine beta-monooxygenase, putative [Ricinus communis]
15 Hb_000086_490 0.0794899043 - - cellulose synthase [Populus tomentosa]
16 Hb_000193_320 0.0800420097 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005523_030 0.0830601394 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
18 Hb_000836_640 0.083480834 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
19 Hb_005686_040 0.086008977 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000328_030 0.0861205402 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]

Gene co-expression network

sample Hb_002739_140 Hb_002739_140 Hb_004920_150 Hb_004920_150 Hb_002739_140--Hb_004920_150 Hb_000776_090 Hb_000776_090 Hb_002739_140--Hb_000776_090 Hb_003972_070 Hb_003972_070 Hb_002739_140--Hb_003972_070 Hb_038927_020 Hb_038927_020 Hb_002739_140--Hb_038927_020 Hb_010488_050 Hb_010488_050 Hb_002739_140--Hb_010488_050 Hb_050514_030 Hb_050514_030 Hb_002739_140--Hb_050514_030 Hb_004117_230 Hb_004117_230 Hb_004920_150--Hb_004117_230 Hb_004920_150--Hb_003972_070 Hb_004920_150--Hb_038927_020 Hb_004920_150--Hb_010488_050 Hb_004920_150--Hb_000776_090 Hb_000836_640 Hb_000836_640 Hb_000776_090--Hb_000836_640 Hb_005523_030 Hb_005523_030 Hb_000776_090--Hb_005523_030 Hb_000086_490 Hb_000086_490 Hb_000776_090--Hb_000086_490 Hb_000776_090--Hb_050514_030 Hb_000162_010 Hb_000162_010 Hb_000776_090--Hb_000162_010 Hb_001014_180 Hb_001014_180 Hb_003972_070--Hb_001014_180 Hb_002311_010 Hb_002311_010 Hb_003972_070--Hb_002311_010 Hb_007281_010 Hb_007281_010 Hb_003972_070--Hb_007281_010 Hb_003972_070--Hb_038927_020 Hb_038927_020--Hb_002311_010 Hb_000416_020 Hb_000416_020 Hb_038927_020--Hb_000416_020 Hb_001935_060 Hb_001935_060 Hb_038927_020--Hb_001935_060 Hb_038927_020--Hb_007281_010 Hb_001377_220 Hb_001377_220 Hb_038927_020--Hb_001377_220 Hb_010488_050--Hb_050514_030 Hb_112765_010 Hb_112765_010 Hb_010488_050--Hb_112765_010 Hb_010488_050--Hb_000162_010 Hb_010488_050--Hb_003972_070 Hb_010166_010 Hb_010166_010 Hb_050514_030--Hb_010166_010 Hb_050514_030--Hb_001935_060 Hb_050514_030--Hb_000836_640 Hb_010288_010 Hb_010288_010 Hb_050514_030--Hb_010288_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.344769 5.36873 5.11846 152.133 0.399071 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.375893 124.568

CAGE analysis