Hb_010488_050

Information

Type transcription factor
Description TF Family: LIM
Location Contig10488: 17436-19184
Sequence    

Annotation

kegg
ID rcu:RCOM_1614610
description Pollen-specific protein SF3, putative
nr
ID KDP28657.1
description hypothetical protein JCGZ_14428 [Jatropha curcas]
swissprot
ID Q1ECF5
description LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana GN=PLIM2B PE=1 SV=1
trembl
ID A0A067JXN8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14428 PE=4 SV=1
Gene Ontology
ID GO:0008270
description lim domain-containing protein plim2b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01664: 18257-18985
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010488_050 0.0 transcription factor TF Family: LIM hypothetical protein JCGZ_14428 [Jatropha curcas]
2 Hb_002739_140 0.06086913 - - PREDICTED: protein TPX2 [Jatropha curcas]
3 Hb_004920_150 0.0672302499 - - conserved hypothetical protein [Ricinus communis]
4 Hb_050514_030 0.0708725344 - - PREDICTED: protein trichome birefringence-like 34 [Jatropha curcas]
5 Hb_112765_010 0.075487824 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000162_010 0.0765943404 - - PREDICTED: dirigent protein 23 [Jatropha curcas]
7 Hb_003972_070 0.0778634175 - - PREDICTED: cytochrome P450 85A1-like [Citrus sinensis]
8 Hb_000776_090 0.0787428917 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
9 Hb_000836_640 0.0848168797 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
10 Hb_001477_050 0.086383778 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
11 Hb_000111_060 0.0876443961 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 6 isoform X2 [Jatropha curcas]
12 Hb_010166_010 0.0914905883 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
13 Hb_010288_010 0.0932721218 - - Beta-glucosidase, putative [Ricinus communis]
14 Hb_001080_240 0.0951412261 - - hypothetical protein PHAVU_001G152800g [Phaseolus vulgaris]
15 Hb_006634_120 0.0975606844 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
16 Hb_004713_040 0.0986972698 - - hypothetical protein JCGZ_22567 [Jatropha curcas]
17 Hb_064445_040 0.0991005348 - - hypothetical protein POPTR_0005s09430g [Populus trichocarpa]
18 Hb_001935_060 0.0991815748 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
19 Hb_005056_040 0.1013172997 - - hypothetical protein POPTR_0007s14730g [Populus trichocarpa]
20 Hb_002311_420 0.1023630392 - - hypothetical protein JCGZ_18919 [Jatropha curcas]

Gene co-expression network

sample Hb_010488_050 Hb_010488_050 Hb_002739_140 Hb_002739_140 Hb_010488_050--Hb_002739_140 Hb_004920_150 Hb_004920_150 Hb_010488_050--Hb_004920_150 Hb_050514_030 Hb_050514_030 Hb_010488_050--Hb_050514_030 Hb_112765_010 Hb_112765_010 Hb_010488_050--Hb_112765_010 Hb_000162_010 Hb_000162_010 Hb_010488_050--Hb_000162_010 Hb_003972_070 Hb_003972_070 Hb_010488_050--Hb_003972_070 Hb_002739_140--Hb_004920_150 Hb_000776_090 Hb_000776_090 Hb_002739_140--Hb_000776_090 Hb_002739_140--Hb_003972_070 Hb_038927_020 Hb_038927_020 Hb_002739_140--Hb_038927_020 Hb_002739_140--Hb_050514_030 Hb_004117_230 Hb_004117_230 Hb_004920_150--Hb_004117_230 Hb_004920_150--Hb_003972_070 Hb_004920_150--Hb_038927_020 Hb_004920_150--Hb_000776_090 Hb_010166_010 Hb_010166_010 Hb_050514_030--Hb_010166_010 Hb_050514_030--Hb_000776_090 Hb_001935_060 Hb_001935_060 Hb_050514_030--Hb_001935_060 Hb_000836_640 Hb_000836_640 Hb_050514_030--Hb_000836_640 Hb_010288_010 Hb_010288_010 Hb_050514_030--Hb_010288_010 Hb_000111_060 Hb_000111_060 Hb_112765_010--Hb_000111_060 Hb_143373_010 Hb_143373_010 Hb_112765_010--Hb_143373_010 Hb_004713_040 Hb_004713_040 Hb_112765_010--Hb_004713_040 Hb_000107_020 Hb_000107_020 Hb_112765_010--Hb_000107_020 Hb_007674_020 Hb_007674_020 Hb_112765_010--Hb_007674_020 Hb_000162_010--Hb_000836_640 Hb_002750_030 Hb_002750_030 Hb_000162_010--Hb_002750_030 Hb_000162_010--Hb_000776_090 Hb_001477_050 Hb_001477_050 Hb_000162_010--Hb_001477_050 Hb_005056_040 Hb_005056_040 Hb_000162_010--Hb_005056_040 Hb_002276_120 Hb_002276_120 Hb_000162_010--Hb_002276_120 Hb_001014_180 Hb_001014_180 Hb_003972_070--Hb_001014_180 Hb_002311_010 Hb_002311_010 Hb_003972_070--Hb_002311_010 Hb_007281_010 Hb_007281_010 Hb_003972_070--Hb_007281_010 Hb_003972_070--Hb_038927_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.02109 0.0949614 0.195701 9.46005 0.0211543 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.015254 6.93163

CAGE analysis