Hb_000111_060

Information

Type transcription factor
Description TF Family: SRS
Location Contig111: 114568-116396
Sequence    

Annotation

kegg
ID rcu:RCOM_1452410
description transcription factor, putative
nr
ID XP_012068665.1
description PREDICTED: protein SHI RELATED SEQUENCE 6 isoform X2 [Jatropha curcas]
swissprot
ID Q94CK9
description Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana GN=LRP1 PE=1 SV=1
trembl
ID A0A067L8V1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24533 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_060 0.0 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 6 isoform X2 [Jatropha curcas]
2 Hb_112765_010 0.0417277007 - - conserved hypothetical protein [Ricinus communis]
3 Hb_135737_010 0.0537495904 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
4 Hb_003972_070 0.0868196402 - - PREDICTED: cytochrome P450 85A1-like [Citrus sinensis]
5 Hb_010488_050 0.0876443961 transcription factor TF Family: LIM hypothetical protein JCGZ_14428 [Jatropha curcas]
6 Hb_026317_040 0.0884766632 - - hypothetical protein POPTR_0009s12270g [Populus trichocarpa]
7 Hb_064396_020 0.0895851169 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
8 Hb_077027_010 0.0899286699 - - hypothetical protein JCGZ_04511 [Jatropha curcas]
9 Hb_064445_040 0.0906522777 - - hypothetical protein POPTR_0005s09430g [Populus trichocarpa]
10 Hb_000392_500 0.0981391787 - - conserved hypothetical protein [Ricinus communis]
11 Hb_010288_010 0.0985312621 - - Beta-glucosidase, putative [Ricinus communis]
12 Hb_050514_030 0.102029375 - - PREDICTED: protein trichome birefringence-like 34 [Jatropha curcas]
13 Hb_004920_150 0.1021374417 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002311_020 0.1034813161 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
15 Hb_000416_020 0.1053776819 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010166_010 0.1070734012 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
17 Hb_004713_040 0.1082295462 - - hypothetical protein JCGZ_22567 [Jatropha curcas]
18 Hb_002739_140 0.1091356618 - - PREDICTED: protein TPX2 [Jatropha curcas]
19 Hb_001014_180 0.1092516412 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
20 Hb_000580_200 0.1108889023 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000111_060 Hb_000111_060 Hb_112765_010 Hb_112765_010 Hb_000111_060--Hb_112765_010 Hb_135737_010 Hb_135737_010 Hb_000111_060--Hb_135737_010 Hb_003972_070 Hb_003972_070 Hb_000111_060--Hb_003972_070 Hb_010488_050 Hb_010488_050 Hb_000111_060--Hb_010488_050 Hb_026317_040 Hb_026317_040 Hb_000111_060--Hb_026317_040 Hb_064396_020 Hb_064396_020 Hb_000111_060--Hb_064396_020 Hb_112765_010--Hb_010488_050 Hb_143373_010 Hb_143373_010 Hb_112765_010--Hb_143373_010 Hb_004713_040 Hb_004713_040 Hb_112765_010--Hb_004713_040 Hb_000107_020 Hb_000107_020 Hb_112765_010--Hb_000107_020 Hb_007674_020 Hb_007674_020 Hb_112765_010--Hb_007674_020 Hb_135737_010--Hb_064396_020 Hb_077027_010 Hb_077027_010 Hb_135737_010--Hb_077027_010 Hb_000392_500 Hb_000392_500 Hb_135737_010--Hb_000392_500 Hb_010288_010 Hb_010288_010 Hb_135737_010--Hb_010288_010 Hb_064445_040 Hb_064445_040 Hb_135737_010--Hb_064445_040 Hb_002739_140 Hb_002739_140 Hb_003972_070--Hb_002739_140 Hb_001014_180 Hb_001014_180 Hb_003972_070--Hb_001014_180 Hb_004920_150 Hb_004920_150 Hb_003972_070--Hb_004920_150 Hb_002311_010 Hb_002311_010 Hb_003972_070--Hb_002311_010 Hb_007281_010 Hb_007281_010 Hb_003972_070--Hb_007281_010 Hb_038927_020 Hb_038927_020 Hb_003972_070--Hb_038927_020 Hb_010488_050--Hb_002739_140 Hb_010488_050--Hb_004920_150 Hb_050514_030 Hb_050514_030 Hb_010488_050--Hb_050514_030 Hb_000162_010 Hb_000162_010 Hb_010488_050--Hb_000162_010 Hb_010488_050--Hb_003972_070 Hb_026317_040--Hb_135737_010 Hb_000563_520 Hb_000563_520 Hb_026317_040--Hb_000563_520 Hb_001080_240 Hb_001080_240 Hb_026317_040--Hb_001080_240 Hb_026317_040--Hb_064396_020 Hb_026317_040--Hb_077027_010 Hb_064396_020--Hb_077027_010 Hb_094439_040 Hb_094439_040 Hb_064396_020--Hb_094439_040 Hb_000557_080 Hb_000557_080 Hb_064396_020--Hb_000557_080 Hb_001289_040 Hb_001289_040 Hb_064396_020--Hb_001289_040 Hb_064396_020--Hb_000392_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0157071 0.334097 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.294387

CAGE analysis