Hb_000557_080

Information

Type -
Description -
Location Contig557: 50393-50662
Sequence    

Annotation

kegg
ID rcu:RCOM_1228530
description hypothetical protein
nr
ID XP_002528885.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SSB6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1228530 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48601: 50372-50706
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000557_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001289_040 0.0379952966 - - NDR1/HIN1-like 1 [Theobroma cacao]
3 Hb_094439_040 0.0445343144 - - PREDICTED: cytochrome P450 93A1-like [Citrus sinensis]
4 Hb_000707_090 0.0521684611 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
5 Hb_064396_020 0.0563786016 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
6 Hb_077027_010 0.0568626619 - - hypothetical protein JCGZ_04511 [Jatropha curcas]
7 Hb_142204_010 0.0585629473 - - pyruvate decarboxylase [Saccharum officinarum]
8 Hb_000421_040 0.0595245202 - - Peptide transporter, putative [Ricinus communis]
9 Hb_007382_110 0.0672685222 - - PREDICTED: bidirectional sugar transporter N3 [Jatropha curcas]
10 Hb_006895_010 0.0679280826 - - PREDICTED: secologanin synthase-like [Citrus sinensis]
11 Hb_061700_010 0.0681246736 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Prunus mume]
12 Hb_000343_070 0.0835231694 - - hypothetical protein JCGZ_06265 [Jatropha curcas]
13 Hb_000172_270 0.0853857827 - - hypothetical protein JCGZ_24087 [Jatropha curcas]
14 Hb_010172_040 0.0858516978 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
15 Hb_000485_100 0.0870727026 - - PREDICTED: putative UPF0481 protein At3g02645 [Populus euphratica]
16 Hb_152868_020 0.0915983641 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
17 Hb_135737_010 0.0980305505 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
18 Hb_024723_010 0.101337321 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
19 Hb_001097_170 0.1022144671 - - PREDICTED: protein NDR1 [Jatropha curcas]
20 Hb_000392_350 0.1036136638 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000557_080 Hb_000557_080 Hb_001289_040 Hb_001289_040 Hb_000557_080--Hb_001289_040 Hb_094439_040 Hb_094439_040 Hb_000557_080--Hb_094439_040 Hb_000707_090 Hb_000707_090 Hb_000557_080--Hb_000707_090 Hb_064396_020 Hb_064396_020 Hb_000557_080--Hb_064396_020 Hb_077027_010 Hb_077027_010 Hb_000557_080--Hb_077027_010 Hb_142204_010 Hb_142204_010 Hb_000557_080--Hb_142204_010 Hb_001289_040--Hb_094439_040 Hb_001289_040--Hb_077027_010 Hb_006895_010 Hb_006895_010 Hb_001289_040--Hb_006895_010 Hb_001289_040--Hb_064396_020 Hb_000421_040 Hb_000421_040 Hb_001289_040--Hb_000421_040 Hb_094439_040--Hb_077027_010 Hb_094439_040--Hb_064396_020 Hb_094439_040--Hb_006895_010 Hb_001097_170 Hb_001097_170 Hb_094439_040--Hb_001097_170 Hb_000707_090--Hb_000421_040 Hb_007382_110 Hb_007382_110 Hb_000707_090--Hb_007382_110 Hb_000707_090--Hb_001289_040 Hb_000343_070 Hb_000343_070 Hb_000707_090--Hb_000343_070 Hb_000707_090--Hb_006895_010 Hb_064396_020--Hb_077027_010 Hb_135737_010 Hb_135737_010 Hb_064396_020--Hb_135737_010 Hb_000392_500 Hb_000392_500 Hb_064396_020--Hb_000392_500 Hb_077027_010--Hb_135737_010 Hb_077027_010--Hb_000392_500 Hb_152868_020 Hb_152868_020 Hb_142204_010--Hb_152868_020 Hb_142204_010--Hb_007382_110 Hb_061700_010 Hb_061700_010 Hb_142204_010--Hb_061700_010 Hb_103225_040 Hb_103225_040 Hb_142204_010--Hb_103225_040 Hb_003858_010 Hb_003858_010 Hb_142204_010--Hb_003858_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 3.90582 19.5262 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 14.729

CAGE analysis