Hb_006895_010

Information

Type -
Description -
Location Contig6895: 15830-26938
Sequence    

Annotation

kegg
ID cit:102609658
description secologanin synthase-like
nr
ID XP_006477948.1
description PREDICTED: secologanin synthase-like [Citrus sinensis]
swissprot
ID Q9LUC5
description Cytochrome P450 72A15 OS=Arabidopsis thaliana GN=CYP72A15 PE=2 SV=1
trembl
ID A0A061F9Q5
description Cytochrome P450, family 72, subfamily A, polypeptide 15 isoform 2 OS=Theobroma cacao GN=TCM_032242 PE=3 SV=1
Gene Ontology
ID GO:0005506
description secologanin synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54162: 15871-16369
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006895_010 0.0 - - PREDICTED: secologanin synthase-like [Citrus sinensis]
2 Hb_001289_040 0.0542088826 - - NDR1/HIN1-like 1 [Theobroma cacao]
3 Hb_094439_040 0.0566470996 - - PREDICTED: cytochrome P450 93A1-like [Citrus sinensis]
4 Hb_000485_100 0.0575565675 - - PREDICTED: putative UPF0481 protein At3g02645 [Populus euphratica]
5 Hb_000707_090 0.0660732851 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
6 Hb_000557_080 0.0679280826 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002391_010 0.0694950798 - - PREDICTED: probable acyl-activating enzyme 1, peroxisomal [Jatropha curcas]
8 Hb_000421_040 0.070230104 - - Peptide transporter, putative [Ricinus communis]
9 Hb_001926_080 0.0746116083 - - PREDICTED: uncharacterized protein LOC103454919 [Malus domestica]
10 Hb_000224_190 0.0750707452 - - zinc finger protein, putative [Ricinus communis]
11 Hb_003025_170 0.0817009327 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
12 Hb_024723_010 0.0835460449 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
13 Hb_002326_010 0.0866393883 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
14 Hb_000343_070 0.0893570936 - - hypothetical protein JCGZ_06265 [Jatropha curcas]
15 Hb_000326_120 0.0938015751 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
16 Hb_001097_170 0.0955049272 - - PREDICTED: protein NDR1 [Jatropha curcas]
17 Hb_077027_010 0.096084163 - - hypothetical protein JCGZ_04511 [Jatropha curcas]
18 Hb_000111_490 0.0963118722 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003549_100 0.0980200144 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
20 Hb_104014_020 0.0984736245 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_006895_010 Hb_006895_010 Hb_001289_040 Hb_001289_040 Hb_006895_010--Hb_001289_040 Hb_094439_040 Hb_094439_040 Hb_006895_010--Hb_094439_040 Hb_000485_100 Hb_000485_100 Hb_006895_010--Hb_000485_100 Hb_000707_090 Hb_000707_090 Hb_006895_010--Hb_000707_090 Hb_000557_080 Hb_000557_080 Hb_006895_010--Hb_000557_080 Hb_002391_010 Hb_002391_010 Hb_006895_010--Hb_002391_010 Hb_001289_040--Hb_094439_040 Hb_001289_040--Hb_000557_080 Hb_077027_010 Hb_077027_010 Hb_001289_040--Hb_077027_010 Hb_064396_020 Hb_064396_020 Hb_001289_040--Hb_064396_020 Hb_000421_040 Hb_000421_040 Hb_001289_040--Hb_000421_040 Hb_094439_040--Hb_000557_080 Hb_094439_040--Hb_077027_010 Hb_094439_040--Hb_064396_020 Hb_001097_170 Hb_001097_170 Hb_094439_040--Hb_001097_170 Hb_000485_100--Hb_002391_010 Hb_001926_080 Hb_001926_080 Hb_000485_100--Hb_001926_080 Hb_024723_010 Hb_024723_010 Hb_000485_100--Hb_024723_010 Hb_000111_490 Hb_000111_490 Hb_000485_100--Hb_000111_490 Hb_000224_190 Hb_000224_190 Hb_000485_100--Hb_000224_190 Hb_000707_090--Hb_000557_080 Hb_000707_090--Hb_000421_040 Hb_007382_110 Hb_007382_110 Hb_000707_090--Hb_007382_110 Hb_000707_090--Hb_001289_040 Hb_000343_070 Hb_000343_070 Hb_000707_090--Hb_000343_070 Hb_000557_080--Hb_064396_020 Hb_000557_080--Hb_077027_010 Hb_142204_010 Hb_142204_010 Hb_000557_080--Hb_142204_010 Hb_002391_010--Hb_001926_080 Hb_002391_010--Hb_000224_190 Hb_002391_010--Hb_024723_010 Hb_002391_010--Hb_000111_490 Hb_001345_050 Hb_001345_050 Hb_002391_010--Hb_001345_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.79601 6.36795 0 0.0172041
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0205094 0 0 0 6.11965

CAGE analysis