Hb_000485_100

Information

Type -
Description -
Location Contig485: 205544-206797
Sequence    

Annotation

kegg
ID rcu:RCOM_1609080
description hypothetical protein
nr
ID XP_011012205.1
description PREDICTED: putative UPF0481 protein At3g02645 [Populus euphratica]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID B9RD25
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1609080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000485_100 0.0 - - PREDICTED: putative UPF0481 protein At3g02645 [Populus euphratica]
2 Hb_002391_010 0.0222831597 - - PREDICTED: probable acyl-activating enzyme 1, peroxisomal [Jatropha curcas]
3 Hb_001926_080 0.0323440809 - - PREDICTED: uncharacterized protein LOC103454919 [Malus domestica]
4 Hb_024723_010 0.035476644 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
5 Hb_000111_490 0.0483361031 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000224_190 0.050776802 - - zinc finger protein, putative [Ricinus communis]
7 Hb_006895_010 0.0575565675 - - PREDICTED: secologanin synthase-like [Citrus sinensis]
8 Hb_000326_120 0.0697735961 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
9 Hb_002326_010 0.0717828727 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
10 Hb_000707_090 0.0760356833 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
11 Hb_000343_070 0.0761069967 - - hypothetical protein JCGZ_06265 [Jatropha curcas]
12 Hb_072771_010 0.0762200623 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
13 Hb_001345_050 0.0762925258 - - hypothetical protein POPTR_0014s14480g [Populus trichocarpa]
14 Hb_001278_120 0.0801598069 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
15 Hb_001289_040 0.0810691764 - - NDR1/HIN1-like 1 [Theobroma cacao]
16 Hb_056506_040 0.0821328016 - - -
17 Hb_004459_010 0.0829662142 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
18 Hb_000917_300 0.0855715551 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
19 Hb_001981_050 0.0859159257 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
20 Hb_000557_080 0.0870727026 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000485_100 Hb_000485_100 Hb_002391_010 Hb_002391_010 Hb_000485_100--Hb_002391_010 Hb_001926_080 Hb_001926_080 Hb_000485_100--Hb_001926_080 Hb_024723_010 Hb_024723_010 Hb_000485_100--Hb_024723_010 Hb_000111_490 Hb_000111_490 Hb_000485_100--Hb_000111_490 Hb_000224_190 Hb_000224_190 Hb_000485_100--Hb_000224_190 Hb_006895_010 Hb_006895_010 Hb_000485_100--Hb_006895_010 Hb_002391_010--Hb_001926_080 Hb_002391_010--Hb_000224_190 Hb_002391_010--Hb_024723_010 Hb_002391_010--Hb_000111_490 Hb_001345_050 Hb_001345_050 Hb_002391_010--Hb_001345_050 Hb_001926_080--Hb_000224_190 Hb_072771_010 Hb_072771_010 Hb_001926_080--Hb_072771_010 Hb_001926_080--Hb_001345_050 Hb_002326_010 Hb_002326_010 Hb_001926_080--Hb_002326_010 Hb_024723_010--Hb_000111_490 Hb_056506_040 Hb_056506_040 Hb_024723_010--Hb_056506_040 Hb_024723_010--Hb_001926_080 Hb_000326_120 Hb_000326_120 Hb_024723_010--Hb_000326_120 Hb_000111_490--Hb_056506_040 Hb_068804_190 Hb_068804_190 Hb_000111_490--Hb_068804_190 Hb_000111_490--Hb_001926_080 Hb_000224_190--Hb_002326_010 Hb_000224_190--Hb_072771_010 Hb_000224_190--Hb_001345_050 Hb_008453_050 Hb_008453_050 Hb_000224_190--Hb_008453_050 Hb_001289_040 Hb_001289_040 Hb_006895_010--Hb_001289_040 Hb_094439_040 Hb_094439_040 Hb_006895_010--Hb_094439_040 Hb_000707_090 Hb_000707_090 Hb_006895_010--Hb_000707_090 Hb_000557_080 Hb_000557_080 Hb_006895_010--Hb_000557_080 Hb_006895_010--Hb_002391_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0251611 0.0668784 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0628238

CAGE analysis