Hb_001289_040

Information

Type -
Description -
Location Contig1289: 79459-80088
Sequence    

Annotation

kegg
ID tcc:TCM_022891
description NDR1/HIN1-like 1
nr
ID XP_007027946.1
description NDR1/HIN1-like 1 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061EUV6
description NDR1/HIN1-like 1 OS=Theobroma cacao GN=TCM_022891 PE=4 SV=1
Gene Ontology
ID GO:0005886
description protein yls9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001289_040 0.0 - - NDR1/HIN1-like 1 [Theobroma cacao]
2 Hb_094439_040 0.0188077676 - - PREDICTED: cytochrome P450 93A1-like [Citrus sinensis]
3 Hb_000557_080 0.0379952966 - - conserved hypothetical protein [Ricinus communis]
4 Hb_077027_010 0.0539233405 - - hypothetical protein JCGZ_04511 [Jatropha curcas]
5 Hb_006895_010 0.0542088826 - - PREDICTED: secologanin synthase-like [Citrus sinensis]
6 Hb_064396_020 0.0571312113 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
7 Hb_000421_040 0.0612127968 - - Peptide transporter, putative [Ricinus communis]
8 Hb_000707_090 0.0627202629 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
9 Hb_001097_170 0.070835449 - - PREDICTED: protein NDR1 [Jatropha curcas]
10 Hb_000172_270 0.0720084789 - - hypothetical protein JCGZ_24087 [Jatropha curcas]
11 Hb_000485_100 0.0810691764 - - PREDICTED: putative UPF0481 protein At3g02645 [Populus euphratica]
12 Hb_061700_010 0.0836314819 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Prunus mume]
13 Hb_010172_040 0.0850647513 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
14 Hb_003025_170 0.0878205571 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
15 Hb_000343_070 0.0898139074 - - hypothetical protein JCGZ_06265 [Jatropha curcas]
16 Hb_142204_010 0.0942007399 - - pyruvate decarboxylase [Saccharum officinarum]
17 Hb_003549_100 0.0953976595 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
18 Hb_007382_110 0.0965767479 - - PREDICTED: bidirectional sugar transporter N3 [Jatropha curcas]
19 Hb_002391_010 0.0974162479 - - PREDICTED: probable acyl-activating enzyme 1, peroxisomal [Jatropha curcas]
20 Hb_135737_010 0.1012331697 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]

Gene co-expression network

sample Hb_001289_040 Hb_001289_040 Hb_094439_040 Hb_094439_040 Hb_001289_040--Hb_094439_040 Hb_000557_080 Hb_000557_080 Hb_001289_040--Hb_000557_080 Hb_077027_010 Hb_077027_010 Hb_001289_040--Hb_077027_010 Hb_006895_010 Hb_006895_010 Hb_001289_040--Hb_006895_010 Hb_064396_020 Hb_064396_020 Hb_001289_040--Hb_064396_020 Hb_000421_040 Hb_000421_040 Hb_001289_040--Hb_000421_040 Hb_094439_040--Hb_000557_080 Hb_094439_040--Hb_077027_010 Hb_094439_040--Hb_064396_020 Hb_094439_040--Hb_006895_010 Hb_001097_170 Hb_001097_170 Hb_094439_040--Hb_001097_170 Hb_000707_090 Hb_000707_090 Hb_000557_080--Hb_000707_090 Hb_000557_080--Hb_064396_020 Hb_000557_080--Hb_077027_010 Hb_142204_010 Hb_142204_010 Hb_000557_080--Hb_142204_010 Hb_077027_010--Hb_064396_020 Hb_135737_010 Hb_135737_010 Hb_077027_010--Hb_135737_010 Hb_000392_500 Hb_000392_500 Hb_077027_010--Hb_000392_500 Hb_000485_100 Hb_000485_100 Hb_006895_010--Hb_000485_100 Hb_006895_010--Hb_000707_090 Hb_006895_010--Hb_000557_080 Hb_002391_010 Hb_002391_010 Hb_006895_010--Hb_002391_010 Hb_064396_020--Hb_135737_010 Hb_064396_020--Hb_000392_500 Hb_000421_040--Hb_000707_090 Hb_000421_040--Hb_000557_080 Hb_061700_010 Hb_061700_010 Hb_000421_040--Hb_061700_010 Hb_010172_040 Hb_010172_040 Hb_000421_040--Hb_010172_040 Hb_000172_270 Hb_000172_270 Hb_000421_040--Hb_000172_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0827673 18.7682 89.2313 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 80.082

CAGE analysis