Hb_000392_500

Information

Type -
Description -
Location Contig392: 392719-393072
Sequence    

Annotation

kegg
ID rcu:RCOM_1513710
description hypothetical protein
nr
ID XP_002511522.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R947
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1513710 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_500 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000007_190 0.0252926474 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 10-like [Jatropha curcas]
3 Hb_064445_040 0.0373036448 - - hypothetical protein POPTR_0005s09430g [Populus trichocarpa]
4 Hb_010288_010 0.046119971 - - Beta-glucosidase, putative [Ricinus communis]
5 Hb_103225_040 0.049276509 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 12-like [Jatropha curcas]
6 Hb_152868_020 0.0503670633 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
7 Hb_135737_010 0.0556204696 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
8 Hb_003793_010 0.0732486995 - - hypothetical protein JCGZ_27055 [Jatropha curcas]
9 Hb_000445_410 0.0777491076 - - hypothetical protein EUGRSUZ_F02776 [Eucalyptus grandis]
10 Hb_064396_020 0.0788288918 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
11 Hb_006634_120 0.0792162375 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
12 Hb_033149_010 0.0797281026 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
13 Hb_077027_010 0.084750812 - - hypothetical protein JCGZ_04511 [Jatropha curcas]
14 Hb_142204_010 0.0886503165 - - pyruvate decarboxylase [Saccharum officinarum]
15 Hb_000347_060 0.0948005635 - - PREDICTED: uncharacterized protein LOC105631356 [Jatropha curcas]
16 Hb_050514_030 0.096457853 - - PREDICTED: protein trichome birefringence-like 34 [Jatropha curcas]
17 Hb_000111_060 0.0981391787 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 6 isoform X2 [Jatropha curcas]
18 Hb_004846_110 0.099582363 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
19 Hb_000037_150 0.1036652383 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
20 Hb_061700_010 0.1041342235 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Prunus mume]

Gene co-expression network

sample Hb_000392_500 Hb_000392_500 Hb_000007_190 Hb_000007_190 Hb_000392_500--Hb_000007_190 Hb_064445_040 Hb_064445_040 Hb_000392_500--Hb_064445_040 Hb_010288_010 Hb_010288_010 Hb_000392_500--Hb_010288_010 Hb_103225_040 Hb_103225_040 Hb_000392_500--Hb_103225_040 Hb_152868_020 Hb_152868_020 Hb_000392_500--Hb_152868_020 Hb_135737_010 Hb_135737_010 Hb_000392_500--Hb_135737_010 Hb_000007_190--Hb_103225_040 Hb_000007_190--Hb_152868_020 Hb_000007_190--Hb_064445_040 Hb_000007_190--Hb_010288_010 Hb_003793_010 Hb_003793_010 Hb_000007_190--Hb_003793_010 Hb_006634_120 Hb_006634_120 Hb_064445_040--Hb_006634_120 Hb_064445_040--Hb_010288_010 Hb_064445_040--Hb_135737_010 Hb_064445_040--Hb_103225_040 Hb_050514_030 Hb_050514_030 Hb_010288_010--Hb_050514_030 Hb_010288_010--Hb_135737_010 Hb_000347_060 Hb_000347_060 Hb_010288_010--Hb_000347_060 Hb_103225_040--Hb_152868_020 Hb_103225_040--Hb_003793_010 Hb_000445_410 Hb_000445_410 Hb_103225_040--Hb_000445_410 Hb_033149_010 Hb_033149_010 Hb_103225_040--Hb_033149_010 Hb_152868_020--Hb_003793_010 Hb_152868_020--Hb_000445_410 Hb_142204_010 Hb_142204_010 Hb_152868_020--Hb_142204_010 Hb_064396_020 Hb_064396_020 Hb_135737_010--Hb_064396_020 Hb_077027_010 Hb_077027_010 Hb_135737_010--Hb_077027_010 Hb_000111_060 Hb_000111_060 Hb_135737_010--Hb_000111_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0857025 1.16011 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.672646

CAGE analysis