Hb_142204_010

Information

Type -
Description -
Location Contig142204: 470-831
Sequence    

Annotation

kegg
ID sita:101776753
description pyruvate decarboxylase 2-like
nr
ID CAB61763.1
description pyruvate decarboxylase [Saccharum officinarum]
swissprot
ID A2XFI3
description Pyruvate decarboxylase 2 OS=Oryza sativa subsp. indica GN=PDC2 PE=2 SV=2
trembl
ID Q9SM49
description Pyruvate decarboxylase (Fragment) OS=Saccharum officinarum GN=pdc PE=2 SV=1
Gene Ontology
ID GO:0000287
description pyruvate decarboxylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_142204_010 0.0 - - pyruvate decarboxylase [Saccharum officinarum]
2 Hb_152868_020 0.0478195493 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
3 Hb_000557_080 0.0585629473 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007382_110 0.0591984755 - - PREDICTED: bidirectional sugar transporter N3 [Jatropha curcas]
5 Hb_061700_010 0.0650666173 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Prunus mume]
6 Hb_103225_040 0.066321995 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 12-like [Jatropha curcas]
7 Hb_003858_010 0.0688903461 - - xyloglucan endotransglucosylase/hydrolase [Gossypium hirsutum]
8 Hb_000445_410 0.0692817773 - - hypothetical protein EUGRSUZ_F02776 [Eucalyptus grandis]
9 Hb_003793_010 0.0699462085 - - hypothetical protein JCGZ_27055 [Jatropha curcas]
10 Hb_008008_040 0.0733459489 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
11 Hb_185608_010 0.0745441154 - - hypothetical protein POPTR_0004s22210g [Populus trichocarpa]
12 Hb_000707_090 0.0777218554 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
13 Hb_181908_010 0.077844102 - - PREDICTED: UDP-glycosyltransferase 73C3 [Jatropha curcas]
14 Hb_011344_040 0.0795863899 - - PREDICTED: 21 kDa protein [Jatropha curcas]
15 Hb_064396_020 0.0871358686 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
16 Hb_000421_040 0.087865823 - - Peptide transporter, putative [Ricinus communis]
17 Hb_000007_190 0.0879265397 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 10-like [Jatropha curcas]
18 Hb_108090_010 0.0883942999 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000392_500 0.0886503165 - - conserved hypothetical protein [Ricinus communis]
20 Hb_077027_010 0.091467053 - - hypothetical protein JCGZ_04511 [Jatropha curcas]

Gene co-expression network

sample Hb_142204_010 Hb_142204_010 Hb_152868_020 Hb_152868_020 Hb_142204_010--Hb_152868_020 Hb_000557_080 Hb_000557_080 Hb_142204_010--Hb_000557_080 Hb_007382_110 Hb_007382_110 Hb_142204_010--Hb_007382_110 Hb_061700_010 Hb_061700_010 Hb_142204_010--Hb_061700_010 Hb_103225_040 Hb_103225_040 Hb_142204_010--Hb_103225_040 Hb_003858_010 Hb_003858_010 Hb_142204_010--Hb_003858_010 Hb_152868_020--Hb_103225_040 Hb_003793_010 Hb_003793_010 Hb_152868_020--Hb_003793_010 Hb_000445_410 Hb_000445_410 Hb_152868_020--Hb_000445_410 Hb_000007_190 Hb_000007_190 Hb_152868_020--Hb_000007_190 Hb_000392_500 Hb_000392_500 Hb_152868_020--Hb_000392_500 Hb_001289_040 Hb_001289_040 Hb_000557_080--Hb_001289_040 Hb_094439_040 Hb_094439_040 Hb_000557_080--Hb_094439_040 Hb_000707_090 Hb_000707_090 Hb_000557_080--Hb_000707_090 Hb_064396_020 Hb_064396_020 Hb_000557_080--Hb_064396_020 Hb_077027_010 Hb_077027_010 Hb_000557_080--Hb_077027_010 Hb_005532_080 Hb_005532_080 Hb_007382_110--Hb_005532_080 Hb_007382_110--Hb_000707_090 Hb_185608_010 Hb_185608_010 Hb_007382_110--Hb_185608_010 Hb_007382_110--Hb_000557_080 Hb_166360_010 Hb_166360_010 Hb_007382_110--Hb_166360_010 Hb_108090_010 Hb_108090_010 Hb_061700_010--Hb_108090_010 Hb_000421_040 Hb_000421_040 Hb_061700_010--Hb_000421_040 Hb_000172_270 Hb_000172_270 Hb_061700_010--Hb_000172_270 Hb_061700_010--Hb_000557_080 Hb_061700_010--Hb_000707_090 Hb_103225_040--Hb_003793_010 Hb_103225_040--Hb_000445_410 Hb_103225_040--Hb_000007_190 Hb_103225_040--Hb_000392_500 Hb_033149_010 Hb_033149_010 Hb_103225_040--Hb_033149_010 Hb_181908_010 Hb_181908_010 Hb_003858_010--Hb_181908_010 Hb_008008_040 Hb_008008_040 Hb_003858_010--Hb_008008_040 Hb_001454_420 Hb_001454_420 Hb_003858_010--Hb_001454_420 Hb_000227_360 Hb_000227_360 Hb_003858_010--Hb_000227_360 Hb_011344_040 Hb_011344_040 Hb_003858_010--Hb_011344_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.07525 6.36879 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 3.57368

CAGE analysis