Hb_003858_010

Information

Type -
Description -
Location Contig3858: 16455-17799
Sequence    

Annotation

kegg
ID tcc:TCM_000870
description Xyloglucan endotransglycosylase
nr
ID ADO24300.1
description xyloglucan endotransglucosylase/hydrolase [Gossypium hirsutum]
swissprot
ID Q8LER3
description Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2
trembl
ID E3UZI8
description Xyloglucan endotransglucosylase/hydrolase OS=Gossypium hirsutum GN=XTH2 PE=2 SV=1
Gene Ontology
ID GO:0005618
description xyloglucan endotransglucosylase hydrolase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38817: 16497-18120
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003858_010 0.0 - - xyloglucan endotransglucosylase/hydrolase [Gossypium hirsutum]
2 Hb_181908_010 0.0490443878 - - PREDICTED: UDP-glycosyltransferase 73C3 [Jatropha curcas]
3 Hb_008008_040 0.0521695303 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
4 Hb_001454_420 0.0595353652 - - multidrug resistance pump, putative [Ricinus communis]
5 Hb_000227_360 0.0673462291 - - PREDICTED: mavicyanin [Jatropha curcas]
6 Hb_142204_010 0.0688903461 - - pyruvate decarboxylase [Saccharum officinarum]
7 Hb_011344_040 0.0707603096 - - PREDICTED: 21 kDa protein [Jatropha curcas]
8 Hb_005440_040 0.0709098871 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
9 Hb_185608_010 0.0712209564 - - hypothetical protein POPTR_0004s22210g [Populus trichocarpa]
10 Hb_108090_010 0.0727246924 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001373_170 0.0742003155 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas]
12 Hb_000445_410 0.0747323257 - - hypothetical protein EUGRSUZ_F02776 [Eucalyptus grandis]
13 Hb_003793_010 0.0780945642 - - hypothetical protein JCGZ_27055 [Jatropha curcas]
14 Hb_093084_030 0.0801529143 - - oleosin2 [Plukenetia volubilis]
15 Hb_152868_020 0.0839224292 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
16 Hb_000531_030 0.0841538743 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007382_110 0.0852277963 - - PREDICTED: bidirectional sugar transporter N3 [Jatropha curcas]
18 Hb_061700_010 0.0861997003 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Prunus mume]
19 Hb_057862_010 0.0899364213 - - protein binding protein, putative [Ricinus communis]
20 Hb_103225_040 0.0905805571 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 12-like [Jatropha curcas]

Gene co-expression network

sample Hb_003858_010 Hb_003858_010 Hb_181908_010 Hb_181908_010 Hb_003858_010--Hb_181908_010 Hb_008008_040 Hb_008008_040 Hb_003858_010--Hb_008008_040 Hb_001454_420 Hb_001454_420 Hb_003858_010--Hb_001454_420 Hb_000227_360 Hb_000227_360 Hb_003858_010--Hb_000227_360 Hb_142204_010 Hb_142204_010 Hb_003858_010--Hb_142204_010 Hb_011344_040 Hb_011344_040 Hb_003858_010--Hb_011344_040 Hb_181908_010--Hb_001454_420 Hb_181908_010--Hb_008008_040 Hb_001373_170 Hb_001373_170 Hb_181908_010--Hb_001373_170 Hb_000445_410 Hb_000445_410 Hb_181908_010--Hb_000445_410 Hb_005653_050 Hb_005653_050 Hb_181908_010--Hb_005653_050 Hb_008008_040--Hb_001454_420 Hb_008008_040--Hb_001373_170 Hb_008008_040--Hb_000445_410 Hb_003793_010 Hb_003793_010 Hb_008008_040--Hb_003793_010 Hb_001454_420--Hb_001373_170 Hb_001454_420--Hb_005653_050 Hb_004225_010 Hb_004225_010 Hb_001454_420--Hb_004225_010 Hb_108090_010 Hb_108090_010 Hb_000227_360--Hb_108090_010 Hb_005440_040 Hb_005440_040 Hb_000227_360--Hb_005440_040 Hb_001456_030 Hb_001456_030 Hb_000227_360--Hb_001456_030 Hb_000227_360--Hb_011344_040 Hb_001357_290 Hb_001357_290 Hb_000227_360--Hb_001357_290 Hb_152868_020 Hb_152868_020 Hb_142204_010--Hb_152868_020 Hb_000557_080 Hb_000557_080 Hb_142204_010--Hb_000557_080 Hb_007382_110 Hb_007382_110 Hb_142204_010--Hb_007382_110 Hb_061700_010 Hb_061700_010 Hb_142204_010--Hb_061700_010 Hb_103225_040 Hb_103225_040 Hb_142204_010--Hb_103225_040 Hb_185608_010 Hb_185608_010 Hb_011344_040--Hb_185608_010 Hb_010193_020 Hb_010193_020 Hb_011344_040--Hb_010193_020 Hb_011344_040--Hb_001357_290 Hb_057862_010 Hb_057862_010 Hb_011344_040--Hb_057862_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.14225 300.475 1671.03 0 1.10104
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.197904 715.212

CAGE analysis