Hb_103225_040

Information

Type transcription factor
Description TF Family: Orphans
Location Contig103225: 70187-71749
Sequence    

Annotation

kegg
ID cic:CICLE_v10015305mg
description hypothetical protein
nr
ID XP_012086385.1
description PREDICTED: zinc finger protein CONSTANS-LIKE 12-like [Jatropha curcas]
swissprot
ID Q9LJ44
description Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana GN=COL12 PE=2 SV=2
trembl
ID A0A067K0T7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22900 PE=4 SV=1
Gene Ontology
ID GO:0005622
description zinc finger protein constans-like 12-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103225_040 0.0 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 12-like [Jatropha curcas]
2 Hb_152868_020 0.0199650736 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
3 Hb_003793_010 0.0241867716 - - hypothetical protein JCGZ_27055 [Jatropha curcas]
4 Hb_000445_410 0.028578305 - - hypothetical protein EUGRSUZ_F02776 [Eucalyptus grandis]
5 Hb_000007_190 0.0370851299 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 10-like [Jatropha curcas]
6 Hb_000392_500 0.049276509 - - conserved hypothetical protein [Ricinus communis]
7 Hb_033149_010 0.0587984529 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
8 Hb_142204_010 0.066321995 - - pyruvate decarboxylase [Saccharum officinarum]
9 Hb_008008_040 0.0701784342 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
10 Hb_010288_010 0.0755301833 - - Beta-glucosidase, putative [Ricinus communis]
11 Hb_064445_040 0.0759382761 - - hypothetical protein POPTR_0005s09430g [Populus trichocarpa]
12 Hb_001373_170 0.0857469783 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas]
13 Hb_181908_010 0.0864016348 - - PREDICTED: UDP-glycosyltransferase 73C3 [Jatropha curcas]
14 Hb_003858_010 0.0905805571 - - xyloglucan endotransglucosylase/hydrolase [Gossypium hirsutum]
15 Hb_004846_110 0.0950838884 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
16 Hb_001454_420 0.0957402585 - - multidrug resistance pump, putative [Ricinus communis]
17 Hb_061700_010 0.0986710419 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Prunus mume]
18 Hb_135737_010 0.0997166075 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
19 Hb_000130_250 0.1023824111 - - PREDICTED: protein trichome birefringence-like 31 [Jatropha curcas]
20 Hb_000086_460 0.1044292012 - - PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Jatropha curcas]

Gene co-expression network

sample Hb_103225_040 Hb_103225_040 Hb_152868_020 Hb_152868_020 Hb_103225_040--Hb_152868_020 Hb_003793_010 Hb_003793_010 Hb_103225_040--Hb_003793_010 Hb_000445_410 Hb_000445_410 Hb_103225_040--Hb_000445_410 Hb_000007_190 Hb_000007_190 Hb_103225_040--Hb_000007_190 Hb_000392_500 Hb_000392_500 Hb_103225_040--Hb_000392_500 Hb_033149_010 Hb_033149_010 Hb_103225_040--Hb_033149_010 Hb_152868_020--Hb_003793_010 Hb_152868_020--Hb_000445_410 Hb_152868_020--Hb_000007_190 Hb_142204_010 Hb_142204_010 Hb_152868_020--Hb_142204_010 Hb_152868_020--Hb_000392_500 Hb_003793_010--Hb_000445_410 Hb_008008_040 Hb_008008_040 Hb_003793_010--Hb_008008_040 Hb_003793_010--Hb_033149_010 Hb_003793_010--Hb_000007_190 Hb_000445_410--Hb_008008_040 Hb_001373_170 Hb_001373_170 Hb_000445_410--Hb_001373_170 Hb_000445_410--Hb_033149_010 Hb_000007_190--Hb_000392_500 Hb_064445_040 Hb_064445_040 Hb_000007_190--Hb_064445_040 Hb_010288_010 Hb_010288_010 Hb_000007_190--Hb_010288_010 Hb_000392_500--Hb_064445_040 Hb_000392_500--Hb_010288_010 Hb_135737_010 Hb_135737_010 Hb_000392_500--Hb_135737_010 Hb_019953_010 Hb_019953_010 Hb_033149_010--Hb_019953_010 Hb_033149_010--Hb_000007_190 Hb_033149_010--Hb_152868_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0127743 0.133879 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0637454

CAGE analysis