Hb_001373_170

Information

Type transcription factor
Description TF Family: WRKY
Location Contig1373: 126051-128139
Sequence    

Annotation

kegg
ID rcu:RCOM_1183250
description WRKY transcription factor, putative
nr
ID XP_012065723.1
description PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas]
swissprot
ID Q9C9F0
description Probable WRKY transcription factor 9 OS=Arabidopsis thaliana GN=WRKY9 PE=2 SV=1
trembl
ID S5CKA9
description Uncharacterized protein OS=Jatropha curcas GN=WRKY34 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001373_170 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas]
2 Hb_001454_420 0.0288612059 - - multidrug resistance pump, putative [Ricinus communis]
3 Hb_008008_040 0.031844451 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
4 Hb_005653_050 0.0356824166 - - PREDICTED: CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase [Jatropha curcas]
5 Hb_181908_010 0.0387720076 - - PREDICTED: UDP-glycosyltransferase 73C3 [Jatropha curcas]
6 Hb_004225_010 0.0445831219 - - -
7 Hb_000445_410 0.0572771644 - - hypothetical protein EUGRSUZ_F02776 [Eucalyptus grandis]
8 Hb_003793_010 0.061673397 - - hypothetical protein JCGZ_27055 [Jatropha curcas]
9 Hb_001308_010 0.0626573496 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003858_010 0.0742003155 - - xyloglucan endotransglucosylase/hydrolase [Gossypium hirsutum]
11 Hb_103225_040 0.0857469783 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 12-like [Jatropha curcas]
12 Hb_092010_010 0.0908204941 - - cysteine proteinase inhibitor 5-like [Cucumis sativus]
13 Hb_012114_090 0.09143782 - - tubulin beta chain, putative [Ricinus communis]
14 Hb_152868_020 0.0924917337 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
15 Hb_004957_010 0.0942488258 - - PREDICTED: probable aquaporin NIP-type [Prunus mume]
16 Hb_033149_010 0.0946290983 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
17 Hb_000005_020 0.1011658226 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
18 Hb_093084_030 0.1024924495 - - oleosin2 [Plukenetia volubilis]
19 Hb_142204_010 0.1041660733 - - pyruvate decarboxylase [Saccharum officinarum]
20 Hb_000997_220 0.1043767622 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]

Gene co-expression network

sample Hb_001373_170 Hb_001373_170 Hb_001454_420 Hb_001454_420 Hb_001373_170--Hb_001454_420 Hb_008008_040 Hb_008008_040 Hb_001373_170--Hb_008008_040 Hb_005653_050 Hb_005653_050 Hb_001373_170--Hb_005653_050 Hb_181908_010 Hb_181908_010 Hb_001373_170--Hb_181908_010 Hb_004225_010 Hb_004225_010 Hb_001373_170--Hb_004225_010 Hb_000445_410 Hb_000445_410 Hb_001373_170--Hb_000445_410 Hb_001454_420--Hb_181908_010 Hb_001454_420--Hb_008008_040 Hb_001454_420--Hb_005653_050 Hb_001454_420--Hb_004225_010 Hb_003858_010 Hb_003858_010 Hb_001454_420--Hb_003858_010 Hb_008008_040--Hb_181908_010 Hb_008008_040--Hb_000445_410 Hb_003793_010 Hb_003793_010 Hb_008008_040--Hb_003793_010 Hb_008008_040--Hb_003858_010 Hb_005653_050--Hb_004225_010 Hb_001308_010 Hb_001308_010 Hb_005653_050--Hb_001308_010 Hb_005653_050--Hb_181908_010 Hb_005653_050--Hb_008008_040 Hb_181908_010--Hb_003858_010 Hb_181908_010--Hb_000445_410 Hb_004225_010--Hb_001308_010 Hb_029584_030 Hb_029584_030 Hb_004225_010--Hb_029584_030 Hb_004225_010--Hb_181908_010 Hb_000445_410--Hb_003793_010 Hb_103225_040 Hb_103225_040 Hb_000445_410--Hb_103225_040 Hb_152868_020 Hb_152868_020 Hb_000445_410--Hb_152868_020 Hb_033149_010 Hb_033149_010 Hb_000445_410--Hb_033149_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0397163 0.308811 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.098852

CAGE analysis