Hb_005653_050

Information

Type -
Description -
Location Contig5653: 64554-65735
Sequence    

Annotation

kegg
ID rcu:RCOM_1280300
description sialyltransferase, putative (EC:2.4.99.4)
nr
ID XP_012072808.1
description PREDICTED: CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase [Jatropha curcas]
swissprot
ID P54751
description CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 OS=Mus musculus GN=St3gal1 PE=2 SV=1
trembl
ID A0A067L0H2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07940 PE=4 SV=1
Gene Ontology
ID GO:0003836
description cmp-n-acetylneuraminate-beta-galactosamide-alpha- -sialyltransferase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005653_050 0.0 - - PREDICTED: CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase [Jatropha curcas]
2 Hb_004225_010 0.008913643 - - -
3 Hb_001373_170 0.0356824166 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas]
4 Hb_001308_010 0.0414106937 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001454_420 0.045168504 - - multidrug resistance pump, putative [Ricinus communis]
6 Hb_181908_010 0.0616362326 - - PREDICTED: UDP-glycosyltransferase 73C3 [Jatropha curcas]
7 Hb_008008_040 0.0632168957 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
8 Hb_004957_010 0.0738057385 - - PREDICTED: probable aquaporin NIP-type [Prunus mume]
9 Hb_029584_030 0.0746147708 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
10 Hb_005614_060 0.081155456 - - Uncharacterized protein TCM_019750 [Theobroma cacao]
11 Hb_000664_010 0.0843561555 - - PREDICTED: histidine-containing phosphotransfer protein 4-like [Jatropha curcas]
12 Hb_003754_010 0.0870384756 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
13 Hb_092010_010 0.08816772 - - cysteine proteinase inhibitor 5-like [Cucumis sativus]
14 Hb_000227_290 0.0882981437 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
15 Hb_000997_220 0.0909509769 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]
16 Hb_012114_090 0.0911612521 - - tubulin beta chain, putative [Ricinus communis]
17 Hb_000445_410 0.0925732006 - - hypothetical protein EUGRSUZ_F02776 [Eucalyptus grandis]
18 Hb_003858_010 0.0965703335 - - xyloglucan endotransglucosylase/hydrolase [Gossypium hirsutum]
19 Hb_003793_010 0.0968085629 - - hypothetical protein JCGZ_27055 [Jatropha curcas]
20 Hb_004440_030 0.098058161 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]

Gene co-expression network

sample Hb_005653_050 Hb_005653_050 Hb_004225_010 Hb_004225_010 Hb_005653_050--Hb_004225_010 Hb_001373_170 Hb_001373_170 Hb_005653_050--Hb_001373_170 Hb_001308_010 Hb_001308_010 Hb_005653_050--Hb_001308_010 Hb_001454_420 Hb_001454_420 Hb_005653_050--Hb_001454_420 Hb_181908_010 Hb_181908_010 Hb_005653_050--Hb_181908_010 Hb_008008_040 Hb_008008_040 Hb_005653_050--Hb_008008_040 Hb_004225_010--Hb_001308_010 Hb_004225_010--Hb_001373_170 Hb_004225_010--Hb_001454_420 Hb_029584_030 Hb_029584_030 Hb_004225_010--Hb_029584_030 Hb_004225_010--Hb_181908_010 Hb_001373_170--Hb_001454_420 Hb_001373_170--Hb_008008_040 Hb_001373_170--Hb_181908_010 Hb_000445_410 Hb_000445_410 Hb_001373_170--Hb_000445_410 Hb_004957_010 Hb_004957_010 Hb_001308_010--Hb_004957_010 Hb_003754_010 Hb_003754_010 Hb_001308_010--Hb_003754_010 Hb_000997_220 Hb_000997_220 Hb_001308_010--Hb_000997_220 Hb_001308_010--Hb_001373_170 Hb_001454_420--Hb_181908_010 Hb_001454_420--Hb_008008_040 Hb_003858_010 Hb_003858_010 Hb_001454_420--Hb_003858_010 Hb_181908_010--Hb_008008_040 Hb_181908_010--Hb_003858_010 Hb_181908_010--Hb_000445_410 Hb_008008_040--Hb_000445_410 Hb_003793_010 Hb_003793_010 Hb_008008_040--Hb_003793_010 Hb_008008_040--Hb_003858_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.139579 1.02295 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.268781

CAGE analysis