Hb_000997_220

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig997: 195389-196606
Sequence    

Annotation

kegg
ID pop:POPTR_0008s16110g
description POPTRDRAFT_720961; aux/IAA family protein
nr
ID XP_012069759.1
description PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]
swissprot
ID Q38832
description Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2
trembl
ID A0A067L874
description Auxin-responsive protein OS=Jatropha curcas GN=JCGZ_02272 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-responsive protein iaa14-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64876: 194603-195831 , PASA_asmbl_64877: 196189-196583
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000997_220 0.0 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]
2 Hb_003754_010 0.0483830282 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
3 Hb_004957_010 0.0495577013 - - PREDICTED: probable aquaporin NIP-type [Prunus mume]
4 Hb_001308_010 0.0599718546 - - conserved hypothetical protein [Ricinus communis]
5 Hb_153544_020 0.0603637546 transcription factor TF Family: TCP PREDICTED: transcription factor TCP12 [Jatropha curcas]
6 Hb_000483_340 0.0616322871 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001856_250 0.0633588752 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
8 Hb_010833_010 0.0639923614 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
9 Hb_006651_020 0.0679430048 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
10 Hb_009079_010 0.072766871 - - JHL18I08.8 [Jatropha curcas]
11 Hb_004884_040 0.0736330871 - - hypothetical protein POPTR_0016s12910g [Populus trichocarpa]
12 Hb_000318_500 0.0736940915 - - conserved hypothetical protein [Ricinus communis]
13 Hb_055276_010 0.0789759746 - - hypothetical protein POPTR_0003s02950g [Populus trichocarpa]
14 Hb_002734_020 0.0790086856 - - PREDICTED: uncharacterized protein LOC105631540 [Jatropha curcas]
15 Hb_027577_010 0.0846330628 - - PREDICTED: uncharacterized protein LOC104779928 [Camelina sativa]
16 Hb_014834_100 0.085410159 - - PREDICTED: probable aquaporin TIP-type [Gossypium raimondii]
17 Hb_000729_040 0.0871223101 - - xyloglucan endotransglucosylase/hydrolase protein 10 precursor [Populus trichocarpa]
18 Hb_004030_040 0.0884535255 - - PREDICTED: protein NRT1/ PTR FAMILY 2.8 [Jatropha curcas]
19 Hb_006249_010 0.0888977628 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
20 Hb_004225_010 0.089696344 - - -

Gene co-expression network

sample Hb_000997_220 Hb_000997_220 Hb_003754_010 Hb_003754_010 Hb_000997_220--Hb_003754_010 Hb_004957_010 Hb_004957_010 Hb_000997_220--Hb_004957_010 Hb_001308_010 Hb_001308_010 Hb_000997_220--Hb_001308_010 Hb_153544_020 Hb_153544_020 Hb_000997_220--Hb_153544_020 Hb_000483_340 Hb_000483_340 Hb_000997_220--Hb_000483_340 Hb_001856_250 Hb_001856_250 Hb_000997_220--Hb_001856_250 Hb_003754_010--Hb_004957_010 Hb_003754_010--Hb_153544_020 Hb_003754_010--Hb_001308_010 Hb_010833_010 Hb_010833_010 Hb_003754_010--Hb_010833_010 Hb_006651_020 Hb_006651_020 Hb_003754_010--Hb_006651_020 Hb_004957_010--Hb_001308_010 Hb_004957_010--Hb_153544_020 Hb_004957_010--Hb_006651_020 Hb_004957_010--Hb_010833_010 Hb_004225_010 Hb_004225_010 Hb_001308_010--Hb_004225_010 Hb_005653_050 Hb_005653_050 Hb_001308_010--Hb_005653_050 Hb_001373_170 Hb_001373_170 Hb_001308_010--Hb_001373_170 Hb_153544_020--Hb_010833_010 Hb_153544_020--Hb_006651_020 Hb_010327_060 Hb_010327_060 Hb_153544_020--Hb_010327_060 Hb_000483_340--Hb_001856_250 Hb_004884_040 Hb_004884_040 Hb_000483_340--Hb_004884_040 Hb_002734_020 Hb_002734_020 Hb_000483_340--Hb_002734_020 Hb_031330_010 Hb_031330_010 Hb_000483_340--Hb_031330_010 Hb_000645_230 Hb_000645_230 Hb_000483_340--Hb_000645_230 Hb_001856_250--Hb_002734_020 Hb_001856_250--Hb_004884_040 Hb_027577_010 Hb_027577_010 Hb_001856_250--Hb_027577_010 Hb_001856_250--Hb_006651_020 Hb_000729_040 Hb_000729_040 Hb_001856_250--Hb_000729_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.287335 5.78703 79.2383 0 0.0429108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0772201 0 0 0.0493312 15.793

CAGE analysis