Hb_000483_340

Information

Type -
Description -
Location Contig483: 308740-309171
Sequence    

Annotation

kegg
ID rcu:RCOM_0120780
description hypothetical protein
nr
ID XP_002531217.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SYZ8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0120780 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44828: 308558-309033
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_340 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001856_250 0.0290348336 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
3 Hb_004884_040 0.0324001567 - - hypothetical protein POPTR_0016s12910g [Populus trichocarpa]
4 Hb_002734_020 0.0331217096 - - PREDICTED: uncharacterized protein LOC105631540 [Jatropha curcas]
5 Hb_031330_010 0.0564855711 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
6 Hb_000997_220 0.0616322871 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]
7 Hb_000645_230 0.0642686925 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
8 Hb_000318_500 0.0644738755 - - conserved hypothetical protein [Ricinus communis]
9 Hb_027577_010 0.0658817075 - - PREDICTED: uncharacterized protein LOC104779928 [Camelina sativa]
10 Hb_000422_090 0.0706722853 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002785_020 0.0718916283 - - PREDICTED: laccase-4-like [Jatropha curcas]
12 Hb_000684_190 0.0725999695 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
13 Hb_000729_040 0.0739512795 - - xyloglucan endotransglucosylase/hydrolase protein 10 precursor [Populus trichocarpa]
14 Hb_006651_020 0.0749758686 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
15 Hb_000487_350 0.0750418907 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000581_010 0.0787467002 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
17 Hb_004030_040 0.0809375976 - - PREDICTED: protein NRT1/ PTR FAMILY 2.8 [Jatropha curcas]
18 Hb_002757_030 0.0837375663 - - unnamed protein product [Vitis vinifera]
19 Hb_010833_010 0.083842948 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
20 Hb_009079_010 0.0845460441 - - JHL18I08.8 [Jatropha curcas]

Gene co-expression network

sample Hb_000483_340 Hb_000483_340 Hb_001856_250 Hb_001856_250 Hb_000483_340--Hb_001856_250 Hb_004884_040 Hb_004884_040 Hb_000483_340--Hb_004884_040 Hb_002734_020 Hb_002734_020 Hb_000483_340--Hb_002734_020 Hb_031330_010 Hb_031330_010 Hb_000483_340--Hb_031330_010 Hb_000997_220 Hb_000997_220 Hb_000483_340--Hb_000997_220 Hb_000645_230 Hb_000645_230 Hb_000483_340--Hb_000645_230 Hb_001856_250--Hb_002734_020 Hb_001856_250--Hb_004884_040 Hb_027577_010 Hb_027577_010 Hb_001856_250--Hb_027577_010 Hb_006651_020 Hb_006651_020 Hb_001856_250--Hb_006651_020 Hb_000729_040 Hb_000729_040 Hb_001856_250--Hb_000729_040 Hb_004884_040--Hb_002734_020 Hb_000318_500 Hb_000318_500 Hb_004884_040--Hb_000318_500 Hb_004884_040--Hb_000645_230 Hb_004884_040--Hb_031330_010 Hb_000422_090 Hb_000422_090 Hb_002734_020--Hb_000422_090 Hb_002785_020 Hb_002785_020 Hb_002734_020--Hb_002785_020 Hb_002734_020--Hb_000645_230 Hb_031330_010--Hb_000645_230 Hb_000684_190 Hb_000684_190 Hb_031330_010--Hb_000684_190 Hb_071079_040 Hb_071079_040 Hb_031330_010--Hb_071079_040 Hb_031330_010--Hb_001856_250 Hb_003754_010 Hb_003754_010 Hb_000997_220--Hb_003754_010 Hb_004957_010 Hb_004957_010 Hb_000997_220--Hb_004957_010 Hb_001308_010 Hb_001308_010 Hb_000997_220--Hb_001308_010 Hb_153544_020 Hb_153544_020 Hb_000997_220--Hb_153544_020 Hb_000997_220--Hb_001856_250 Hb_000645_230--Hb_000684_190 Hb_000645_230--Hb_002785_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.04531 7.83475 165.924 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.172644 0 0 0.172051 38.0937

CAGE analysis