Hb_000318_500

Information

Type -
Description -
Location Contig318: 496926-498094
Sequence    

Annotation

kegg
ID rcu:RCOM_0938640
description hypothetical protein
nr
ID XP_002519114.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q10EJ2
description CASP-like protein 5C1 OS=Oryza sativa subsp. japonica GN=Os03g0767900 PE=2 SV=1
trembl
ID B9RZE5
description CASP-like protein OS=Ricinus communis GN=RCOM_0938640 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein 5c1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33579: 496992-498075
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_500 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004884_040 0.0530069713 - - hypothetical protein POPTR_0016s12910g [Populus trichocarpa]
3 Hb_006249_010 0.0550231993 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
4 Hb_000483_340 0.0644738755 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002734_020 0.0659723755 - - PREDICTED: uncharacterized protein LOC105631540 [Jatropha curcas]
6 Hb_000816_090 0.0695971423 transcription factor TF Family: TRAF protein binding protein, putative [Ricinus communis]
7 Hb_000327_350 0.0736260521 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
8 Hb_000997_220 0.0736940915 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]
9 Hb_006570_170 0.0745177637 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
10 Hb_001856_250 0.0768067554 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
11 Hb_010833_010 0.0804209373 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
12 Hb_103468_010 0.081344777 - - protein binding protein, putative [Ricinus communis]
13 Hb_003060_020 0.0813458244 - - serine carboxypeptidase, putative [Ricinus communis]
14 Hb_009079_010 0.0822445163 - - JHL18I08.8 [Jatropha curcas]
15 Hb_153544_020 0.0826296874 transcription factor TF Family: TCP PREDICTED: transcription factor TCP12 [Jatropha curcas]
16 Hb_022250_140 0.0831425364 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
17 Hb_118934_010 0.0847125596 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
18 Hb_001634_050 0.0848630828 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
19 Hb_000521_030 0.0864258607 - - PREDICTED: uncharacterized protein LOC105650350 [Jatropha curcas]
20 Hb_000645_230 0.0885422118 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000318_500 Hb_000318_500 Hb_004884_040 Hb_004884_040 Hb_000318_500--Hb_004884_040 Hb_006249_010 Hb_006249_010 Hb_000318_500--Hb_006249_010 Hb_000483_340 Hb_000483_340 Hb_000318_500--Hb_000483_340 Hb_002734_020 Hb_002734_020 Hb_000318_500--Hb_002734_020 Hb_000816_090 Hb_000816_090 Hb_000318_500--Hb_000816_090 Hb_000327_350 Hb_000327_350 Hb_000318_500--Hb_000327_350 Hb_004884_040--Hb_002734_020 Hb_004884_040--Hb_000483_340 Hb_001856_250 Hb_001856_250 Hb_004884_040--Hb_001856_250 Hb_000645_230 Hb_000645_230 Hb_004884_040--Hb_000645_230 Hb_031330_010 Hb_031330_010 Hb_004884_040--Hb_031330_010 Hb_001634_050 Hb_001634_050 Hb_006249_010--Hb_001634_050 Hb_000107_240 Hb_000107_240 Hb_006249_010--Hb_000107_240 Hb_006570_170 Hb_006570_170 Hb_006249_010--Hb_006570_170 Hb_103468_010 Hb_103468_010 Hb_006249_010--Hb_103468_010 Hb_000868_020 Hb_000868_020 Hb_006249_010--Hb_000868_020 Hb_000483_340--Hb_001856_250 Hb_000483_340--Hb_002734_020 Hb_000483_340--Hb_031330_010 Hb_000997_220 Hb_000997_220 Hb_000483_340--Hb_000997_220 Hb_000483_340--Hb_000645_230 Hb_002734_020--Hb_001856_250 Hb_000422_090 Hb_000422_090 Hb_002734_020--Hb_000422_090 Hb_002785_020 Hb_002785_020 Hb_002734_020--Hb_002785_020 Hb_002734_020--Hb_000645_230 Hb_003060_020 Hb_003060_020 Hb_000816_090--Hb_003060_020 Hb_000816_090--Hb_000327_350 Hb_000816_090--Hb_006570_170 Hb_005396_020 Hb_005396_020 Hb_000816_090--Hb_005396_020 Hb_003528_090 Hb_003528_090 Hb_000816_090--Hb_003528_090 Hb_000816_090--Hb_001634_050 Hb_000327_350--Hb_003060_020 Hb_000521_030 Hb_000521_030 Hb_000327_350--Hb_000521_030 Hb_000327_350--Hb_003528_090 Hb_000244_290 Hb_000244_290 Hb_000327_350--Hb_000244_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0681224 0.212652 4.13495 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.662744

CAGE analysis