Hb_000645_230

Information

Type -
Description -
Location Contig645: 190699-192602
Sequence    

Annotation

kegg
ID rcu:RCOM_0999860
description chitinase, putative (EC:3.2.1.14)
nr
ID XP_012084037.1
description PREDICTED: chitinase-like protein 2 [Jatropha curcas]
swissprot
ID Q9LSP9
description Chitinase-like protein 2 OS=Arabidopsis thaliana GN=CTL2 PE=2 SV=1
trembl
ID A0A067K6J6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18970 PE=4 SV=1
Gene Ontology
ID GO:0004568
description chitinase-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52279: 190697-192672 , PASA_asmbl_52281: 190730-192605
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000645_230 0.0 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
2 Hb_000684_190 0.0316349075 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
3 Hb_002785_020 0.0483735427 - - PREDICTED: laccase-4-like [Jatropha curcas]
4 Hb_031330_010 0.0521415338 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
5 Hb_004884_040 0.0553378261 - - hypothetical protein POPTR_0016s12910g [Populus trichocarpa]
6 Hb_002734_020 0.0641102982 - - PREDICTED: uncharacterized protein LOC105631540 [Jatropha curcas]
7 Hb_000483_340 0.0642686925 - - conserved hypothetical protein [Ricinus communis]
8 Hb_071079_040 0.0728136925 - - PREDICTED: bidirectional sugar transporter SWEET3 [Jatropha curcas]
9 Hb_000422_090 0.072898314 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000339_060 0.0733809599 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
11 Hb_001856_250 0.0756299929 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
12 Hb_001935_200 0.0759023226 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
13 Hb_003638_020 0.0848518152 - - PREDICTED: uncharacterized protein LOC105645807 [Jatropha curcas]
14 Hb_000608_090 0.0860057956 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000497_030 0.0867388118 - - -
16 Hb_003788_030 0.0872176371 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
17 Hb_002085_060 0.0879461651 - - conserved hypothetical protein [Ricinus communis]
18 Hb_070771_010 0.0883157332 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
19 Hb_000318_500 0.0885422118 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005616_020 0.089029487 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000645_230 Hb_000645_230 Hb_000684_190 Hb_000684_190 Hb_000645_230--Hb_000684_190 Hb_002785_020 Hb_002785_020 Hb_000645_230--Hb_002785_020 Hb_031330_010 Hb_031330_010 Hb_000645_230--Hb_031330_010 Hb_004884_040 Hb_004884_040 Hb_000645_230--Hb_004884_040 Hb_002734_020 Hb_002734_020 Hb_000645_230--Hb_002734_020 Hb_000483_340 Hb_000483_340 Hb_000645_230--Hb_000483_340 Hb_000684_190--Hb_002785_020 Hb_001935_200 Hb_001935_200 Hb_000684_190--Hb_001935_200 Hb_000422_090 Hb_000422_090 Hb_000684_190--Hb_000422_090 Hb_000684_190--Hb_004884_040 Hb_000684_190--Hb_002734_020 Hb_003788_030 Hb_003788_030 Hb_002785_020--Hb_003788_030 Hb_002785_020--Hb_002734_020 Hb_002785_020--Hb_001935_200 Hb_002785_020--Hb_000422_090 Hb_031330_010--Hb_000483_340 Hb_031330_010--Hb_004884_040 Hb_031330_010--Hb_000684_190 Hb_071079_040 Hb_071079_040 Hb_031330_010--Hb_071079_040 Hb_001856_250 Hb_001856_250 Hb_031330_010--Hb_001856_250 Hb_004884_040--Hb_002734_020 Hb_004884_040--Hb_000483_340 Hb_004884_040--Hb_001856_250 Hb_000318_500 Hb_000318_500 Hb_004884_040--Hb_000318_500 Hb_002734_020--Hb_001856_250 Hb_002734_020--Hb_000483_340 Hb_002734_020--Hb_000422_090 Hb_000483_340--Hb_001856_250 Hb_000997_220 Hb_000997_220 Hb_000483_340--Hb_000997_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.244345 70.1416 84.405 2011.08 1.3806 0.766212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0398551 0.0940531 0 3.10119 504.748

CAGE analysis