Hb_001935_200

Information

Type transcription factor
Description TF Family: C2H2
Location Contig1935: 190281-191720
Sequence    

Annotation

kegg
ID rcu:RCOM_1610140
description hypothetical protein
nr
ID XP_002511650.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O65499
description Zinc finger protein ZAT3 OS=Arabidopsis thaliana GN=ZAT3 PE=2 SV=1
trembl
ID B9RD61
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1610140 PE=4 SV=1
Gene Ontology
ID GO:0003700
description zinc finger protein zat1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001935_200 0.0 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
2 Hb_000684_190 0.0560070702 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
3 Hb_003788_030 0.060015785 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
4 Hb_002785_020 0.0650637938 - - PREDICTED: laccase-4-like [Jatropha curcas]
5 Hb_000645_230 0.0759023226 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
6 Hb_000422_090 0.0827080245 - - conserved hypothetical protein [Ricinus communis]
7 Hb_155215_030 0.0847934346 - - Cucumisin precursor, putative [Ricinus communis]
8 Hb_003645_040 0.0848404018 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
9 Hb_002734_020 0.0935129933 - - PREDICTED: uncharacterized protein LOC105631540 [Jatropha curcas]
10 Hb_000696_130 0.0955337456 - - nucleic acid binding protein, putative [Ricinus communis]
11 Hb_002660_180 0.0968120655 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002636_170 0.0984025722 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]
13 Hb_002085_060 0.0989098352 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004884_040 0.099640314 - - hypothetical protein POPTR_0016s12910g [Populus trichocarpa]
15 Hb_001307_180 0.0996592576 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
16 Hb_009767_040 0.0997903556 - - PREDICTED: uncharacterized protein LOC105127022 [Populus euphratica]
17 Hb_070771_010 0.1021507898 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
18 Hb_000339_060 0.104706534 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
19 Hb_003638_020 0.1063982239 - - PREDICTED: uncharacterized protein LOC105645807 [Jatropha curcas]
20 Hb_011912_010 0.1072730153 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001935_200 Hb_001935_200 Hb_000684_190 Hb_000684_190 Hb_001935_200--Hb_000684_190 Hb_003788_030 Hb_003788_030 Hb_001935_200--Hb_003788_030 Hb_002785_020 Hb_002785_020 Hb_001935_200--Hb_002785_020 Hb_000645_230 Hb_000645_230 Hb_001935_200--Hb_000645_230 Hb_000422_090 Hb_000422_090 Hb_001935_200--Hb_000422_090 Hb_155215_030 Hb_155215_030 Hb_001935_200--Hb_155215_030 Hb_000684_190--Hb_000645_230 Hb_000684_190--Hb_002785_020 Hb_000684_190--Hb_000422_090 Hb_004884_040 Hb_004884_040 Hb_000684_190--Hb_004884_040 Hb_002734_020 Hb_002734_020 Hb_000684_190--Hb_002734_020 Hb_003788_030--Hb_002785_020 Hb_003788_030--Hb_000684_190 Hb_003788_030--Hb_000422_090 Hb_000696_130 Hb_000696_130 Hb_003788_030--Hb_000696_130 Hb_002636_170 Hb_002636_170 Hb_003788_030--Hb_002636_170 Hb_002785_020--Hb_000645_230 Hb_002785_020--Hb_002734_020 Hb_002785_020--Hb_000422_090 Hb_031330_010 Hb_031330_010 Hb_000645_230--Hb_031330_010 Hb_000645_230--Hb_004884_040 Hb_000645_230--Hb_002734_020 Hb_000483_340 Hb_000483_340 Hb_000645_230--Hb_000483_340 Hb_000422_090--Hb_002636_170 Hb_000422_090--Hb_000696_130 Hb_002660_180 Hb_002660_180 Hb_000422_090--Hb_002660_180 Hb_000422_090--Hb_002734_020 Hb_001856_250 Hb_001856_250 Hb_000422_090--Hb_001856_250 Hb_004529_010 Hb_004529_010 Hb_155215_030--Hb_004529_010 Hb_155215_030--Hb_003788_030 Hb_004449_100 Hb_004449_100 Hb_155215_030--Hb_004449_100 Hb_155215_030--Hb_000684_190 Hb_003645_040 Hb_003645_040 Hb_155215_030--Hb_003645_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.104816 0.0338545 2.50911 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.699201

CAGE analysis