Hb_002734_020

Information

Type -
Description -
Location Contig2734: 11095-11894
Sequence    

Annotation

kegg
ID vvi:104878368
description uncharacterized LOC104878368
nr
ID XP_012069083.1
description PREDICTED: uncharacterized protein LOC105631540 [Jatropha curcas]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A0A067J8U8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00004 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002734_020 0.0 - - PREDICTED: uncharacterized protein LOC105631540 [Jatropha curcas]
2 Hb_004884_040 0.0245565537 - - hypothetical protein POPTR_0016s12910g [Populus trichocarpa]
3 Hb_001856_250 0.0328225152 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
4 Hb_000483_340 0.0331217096 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000422_090 0.0602161512 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002785_020 0.0640974967 - - PREDICTED: laccase-4-like [Jatropha curcas]
7 Hb_000645_230 0.0641102982 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
8 Hb_000318_500 0.0659723755 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000684_190 0.0662587916 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
10 Hb_004030_040 0.0714531587 - - PREDICTED: protein NRT1/ PTR FAMILY 2.8 [Jatropha curcas]
11 Hb_006651_020 0.0714562295 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
12 Hb_002757_030 0.0723752186 - - unnamed protein product [Vitis vinifera]
13 Hb_031330_010 0.072999647 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
14 Hb_027577_010 0.0743549274 - - PREDICTED: uncharacterized protein LOC104779928 [Camelina sativa]
15 Hb_000487_350 0.0759330303 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000997_220 0.0790086856 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]
17 Hb_000581_010 0.0792547802 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
18 Hb_000729_040 0.081559756 - - xyloglucan endotransglucosylase/hydrolase protein 10 precursor [Populus trichocarpa]
19 Hb_010833_010 0.084547204 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
20 Hb_000521_030 0.0865147989 - - PREDICTED: uncharacterized protein LOC105650350 [Jatropha curcas]

Gene co-expression network

sample Hb_002734_020 Hb_002734_020 Hb_004884_040 Hb_004884_040 Hb_002734_020--Hb_004884_040 Hb_001856_250 Hb_001856_250 Hb_002734_020--Hb_001856_250 Hb_000483_340 Hb_000483_340 Hb_002734_020--Hb_000483_340 Hb_000422_090 Hb_000422_090 Hb_002734_020--Hb_000422_090 Hb_002785_020 Hb_002785_020 Hb_002734_020--Hb_002785_020 Hb_000645_230 Hb_000645_230 Hb_002734_020--Hb_000645_230 Hb_004884_040--Hb_000483_340 Hb_004884_040--Hb_001856_250 Hb_000318_500 Hb_000318_500 Hb_004884_040--Hb_000318_500 Hb_004884_040--Hb_000645_230 Hb_031330_010 Hb_031330_010 Hb_004884_040--Hb_031330_010 Hb_001856_250--Hb_000483_340 Hb_027577_010 Hb_027577_010 Hb_001856_250--Hb_027577_010 Hb_006651_020 Hb_006651_020 Hb_001856_250--Hb_006651_020 Hb_000729_040 Hb_000729_040 Hb_001856_250--Hb_000729_040 Hb_000483_340--Hb_031330_010 Hb_000997_220 Hb_000997_220 Hb_000483_340--Hb_000997_220 Hb_000483_340--Hb_000645_230 Hb_002636_170 Hb_002636_170 Hb_000422_090--Hb_002636_170 Hb_000696_130 Hb_000696_130 Hb_000422_090--Hb_000696_130 Hb_002660_180 Hb_002660_180 Hb_000422_090--Hb_002660_180 Hb_000684_190 Hb_000684_190 Hb_000422_090--Hb_000684_190 Hb_000422_090--Hb_001856_250 Hb_002785_020--Hb_000684_190 Hb_002785_020--Hb_000645_230 Hb_003788_030 Hb_003788_030 Hb_002785_020--Hb_003788_030 Hb_001935_200 Hb_001935_200 Hb_002785_020--Hb_001935_200 Hb_002785_020--Hb_000422_090 Hb_000645_230--Hb_000684_190 Hb_000645_230--Hb_031330_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.230526 0.698506 18.4062 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 4.3045

CAGE analysis