Hb_027577_010

Information

Type -
Description -
Location Contig27577: 1426-1826
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_010502661.1
description PREDICTED: uncharacterized protein LOC104779928 [Camelina sativa]
swissprot
ID -
description -
trembl
ID C6T2S2
description Putative uncharacterized protein OS=Glycine max PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027577_010 0.0 - - PREDICTED: uncharacterized protein LOC104779928 [Camelina sativa]
2 Hb_180518_010 0.0336564482 - - PREDICTED: receptor-like protein 2 [Jatropha curcas]
3 Hb_000487_350 0.0358139765 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000581_010 0.0399640441 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
5 Hb_001856_250 0.0584302867 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
6 Hb_000729_040 0.0642832329 - - xyloglucan endotransglucosylase/hydrolase protein 10 precursor [Populus trichocarpa]
7 Hb_000483_340 0.0658817075 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002031_020 0.0671470298 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
9 Hb_103468_010 0.0701448875 - - protein binding protein, putative [Ricinus communis]
10 Hb_002734_020 0.0743549274 - - PREDICTED: uncharacterized protein LOC105631540 [Jatropha curcas]
11 Hb_000462_120 0.0774276176 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
12 Hb_004884_040 0.0804614929 - - hypothetical protein POPTR_0016s12910g [Populus trichocarpa]
13 Hb_005291_020 0.0806492366 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000997_220 0.0846330628 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]
15 Hb_000327_350 0.0847717983 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
16 Hb_006651_020 0.0853159364 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
17 Hb_002757_030 0.0856388714 - - unnamed protein product [Vitis vinifera]
18 Hb_003580_020 0.086700777 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004030_040 0.0868269029 - - PREDICTED: protein NRT1/ PTR FAMILY 2.8 [Jatropha curcas]
20 Hb_002785_020 0.087131482 - - PREDICTED: laccase-4-like [Jatropha curcas]

Gene co-expression network

sample Hb_027577_010 Hb_027577_010 Hb_180518_010 Hb_180518_010 Hb_027577_010--Hb_180518_010 Hb_000487_350 Hb_000487_350 Hb_027577_010--Hb_000487_350 Hb_000581_010 Hb_000581_010 Hb_027577_010--Hb_000581_010 Hb_001856_250 Hb_001856_250 Hb_027577_010--Hb_001856_250 Hb_000729_040 Hb_000729_040 Hb_027577_010--Hb_000729_040 Hb_000483_340 Hb_000483_340 Hb_027577_010--Hb_000483_340 Hb_180518_010--Hb_000581_010 Hb_180518_010--Hb_000487_350 Hb_002031_020 Hb_002031_020 Hb_180518_010--Hb_002031_020 Hb_005291_020 Hb_005291_020 Hb_180518_010--Hb_005291_020 Hb_103468_010 Hb_103468_010 Hb_180518_010--Hb_103468_010 Hb_000487_350--Hb_000581_010 Hb_000487_350--Hb_002031_020 Hb_000487_350--Hb_001856_250 Hb_000487_350--Hb_000729_040 Hb_000581_010--Hb_002031_020 Hb_000581_010--Hb_000729_040 Hb_000581_010--Hb_001856_250 Hb_001856_250--Hb_000483_340 Hb_002734_020 Hb_002734_020 Hb_001856_250--Hb_002734_020 Hb_004884_040 Hb_004884_040 Hb_001856_250--Hb_004884_040 Hb_006651_020 Hb_006651_020 Hb_001856_250--Hb_006651_020 Hb_001856_250--Hb_000729_040 Hb_000462_120 Hb_000462_120 Hb_000729_040--Hb_000462_120 Hb_000729_040--Hb_000483_340 Hb_000483_340--Hb_004884_040 Hb_000483_340--Hb_002734_020 Hb_031330_010 Hb_031330_010 Hb_000483_340--Hb_031330_010 Hb_000997_220 Hb_000997_220 Hb_000483_340--Hb_000997_220 Hb_000645_230 Hb_000645_230 Hb_000483_340--Hb_000645_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.110877 0.702882 18.0669 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.207153 3.7435

CAGE analysis