Hb_005291_020

Information

Type -
Description -
Location Contig5291: 35125-37399
Sequence    

Annotation

kegg
ID rcu:RCOM_0669580
description hypothetical protein
nr
ID XP_002520559.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S3J0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0669580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47263: 35196-35362 , PASA_asmbl_47264: 35451-36474
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005291_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003580_020 0.0503273331 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000462_120 0.0641436873 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
4 Hb_002014_130 0.0677200512 - - conserved hypothetical protein [Ricinus communis]
5 Hb_180518_010 0.0703763691 - - PREDICTED: receptor-like protein 2 [Jatropha curcas]
6 Hb_027577_010 0.0806492366 - - PREDICTED: uncharacterized protein LOC104779928 [Camelina sativa]
7 Hb_000497_030 0.0842135002 - - -
8 Hb_000188_040 0.0862157298 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
9 Hb_006717_060 0.0951939174 - - PREDICTED: peroxidase 42 [Jatropha curcas]
10 Hb_103468_010 0.0972968989 - - protein binding protein, putative [Ricinus communis]
11 Hb_000729_040 0.1009220199 - - xyloglucan endotransglucosylase/hydrolase protein 10 precursor [Populus trichocarpa]
12 Hb_002031_020 0.1025705625 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
13 Hb_000581_010 0.1039574671 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
14 Hb_000487_350 0.1046579129 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005616_020 0.1053130172 - - kinase, putative [Ricinus communis]
16 Hb_014834_100 0.1061711303 - - PREDICTED: probable aquaporin TIP-type [Gossypium raimondii]
17 Hb_133926_010 0.1090010827 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
18 Hb_001584_270 0.1098899524 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011081_010 0.1100490741 - - unnamed protein product [Coffea canephora]
20 Hb_000483_340 0.1118183945 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005291_020 Hb_005291_020 Hb_003580_020 Hb_003580_020 Hb_005291_020--Hb_003580_020 Hb_000462_120 Hb_000462_120 Hb_005291_020--Hb_000462_120 Hb_002014_130 Hb_002014_130 Hb_005291_020--Hb_002014_130 Hb_180518_010 Hb_180518_010 Hb_005291_020--Hb_180518_010 Hb_027577_010 Hb_027577_010 Hb_005291_020--Hb_027577_010 Hb_000497_030 Hb_000497_030 Hb_005291_020--Hb_000497_030 Hb_003580_020--Hb_000462_120 Hb_006717_060 Hb_006717_060 Hb_003580_020--Hb_006717_060 Hb_003580_020--Hb_000497_030 Hb_000699_220 Hb_000699_220 Hb_003580_020--Hb_000699_220 Hb_003580_020--Hb_002014_130 Hb_005616_020 Hb_005616_020 Hb_000462_120--Hb_005616_020 Hb_000729_040 Hb_000729_040 Hb_000462_120--Hb_000729_040 Hb_001456_030 Hb_001456_030 Hb_000462_120--Hb_001456_030 Hb_000462_120--Hb_027577_010 Hb_002014_130--Hb_006717_060 Hb_002014_130--Hb_000497_030 Hb_000408_060 Hb_000408_060 Hb_002014_130--Hb_000408_060 Hb_009421_060 Hb_009421_060 Hb_002014_130--Hb_009421_060 Hb_180518_010--Hb_027577_010 Hb_000581_010 Hb_000581_010 Hb_180518_010--Hb_000581_010 Hb_000487_350 Hb_000487_350 Hb_180518_010--Hb_000487_350 Hb_002031_020 Hb_002031_020 Hb_180518_010--Hb_002031_020 Hb_103468_010 Hb_103468_010 Hb_180518_010--Hb_103468_010 Hb_027577_010--Hb_000487_350 Hb_027577_010--Hb_000581_010 Hb_001856_250 Hb_001856_250 Hb_027577_010--Hb_001856_250 Hb_027577_010--Hb_000729_040 Hb_000483_340 Hb_000483_340 Hb_027577_010--Hb_000483_340 Hb_000497_030--Hb_000699_220 Hb_000497_030--Hb_006717_060 Hb_071079_040 Hb_071079_040 Hb_000497_030--Hb_071079_040 Hb_001349_040 Hb_001349_040 Hb_000497_030--Hb_001349_040 Hb_000083_200 Hb_000083_200 Hb_000497_030--Hb_000083_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0223539 0.140571 1.81825 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0584705 0.390212

CAGE analysis