Hb_000729_040

Information

Type -
Description -
Location Contig729: 74696-76958
Sequence    

Annotation

kegg
ID pop:POPTR_0009s08710g
description POPTRDRAFT_557559; xyloglucan endotransglucosylase/hydrolase protein 10 precursor
nr
ID XP_002313201.1
description xyloglucan endotransglucosylase/hydrolase protein 10 precursor [Populus trichocarpa]
swissprot
ID Q9ZVK1
description Probable xyloglucan endotransglucosylase/hydrolase protein 10 OS=Arabidopsis thaliana GN=XTH10 PE=2 SV=1
trembl
ID B9HN39
description Xyloglucan endotransglucosylase/hydrolase OS=Populus trichocarpa GN=POPTR_0009s08710g PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable xyloglucan endotransglucosylase hydrolase protein 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55885: 74595-76794
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000729_040 0.0 - - xyloglucan endotransglucosylase/hydrolase protein 10 precursor [Populus trichocarpa]
2 Hb_001856_250 0.0605359552 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
3 Hb_000487_350 0.062848278 - - conserved hypothetical protein [Ricinus communis]
4 Hb_027577_010 0.0642832329 - - PREDICTED: uncharacterized protein LOC104779928 [Camelina sativa]
5 Hb_000581_010 0.0653648402 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
6 Hb_000462_120 0.0668609018 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
7 Hb_000483_340 0.0739512795 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000422_090 0.0771095171 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005616_020 0.0786723435 - - kinase, putative [Ricinus communis]
10 Hb_031330_010 0.0800710043 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
11 Hb_002734_020 0.081559756 - - PREDICTED: uncharacterized protein LOC105631540 [Jatropha curcas]
12 Hb_180518_010 0.0863916999 - - PREDICTED: receptor-like protein 2 [Jatropha curcas]
13 Hb_000997_220 0.0871223101 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]
14 Hb_002031_020 0.0871678136 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
15 Hb_006651_020 0.0872106826 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
16 Hb_004884_040 0.0879345975 - - hypothetical protein POPTR_0016s12910g [Populus trichocarpa]
17 Hb_003580_020 0.0895712087 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004030_040 0.0919967486 - - PREDICTED: protein NRT1/ PTR FAMILY 2.8 [Jatropha curcas]
19 Hb_002757_030 0.0936111294 - - unnamed protein product [Vitis vinifera]
20 Hb_000037_150 0.0948412158 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]

Gene co-expression network

sample Hb_000729_040 Hb_000729_040 Hb_001856_250 Hb_001856_250 Hb_000729_040--Hb_001856_250 Hb_000487_350 Hb_000487_350 Hb_000729_040--Hb_000487_350 Hb_027577_010 Hb_027577_010 Hb_000729_040--Hb_027577_010 Hb_000581_010 Hb_000581_010 Hb_000729_040--Hb_000581_010 Hb_000462_120 Hb_000462_120 Hb_000729_040--Hb_000462_120 Hb_000483_340 Hb_000483_340 Hb_000729_040--Hb_000483_340 Hb_001856_250--Hb_000483_340 Hb_002734_020 Hb_002734_020 Hb_001856_250--Hb_002734_020 Hb_004884_040 Hb_004884_040 Hb_001856_250--Hb_004884_040 Hb_001856_250--Hb_027577_010 Hb_006651_020 Hb_006651_020 Hb_001856_250--Hb_006651_020 Hb_000487_350--Hb_000581_010 Hb_000487_350--Hb_027577_010 Hb_002031_020 Hb_002031_020 Hb_000487_350--Hb_002031_020 Hb_180518_010 Hb_180518_010 Hb_000487_350--Hb_180518_010 Hb_000487_350--Hb_001856_250 Hb_027577_010--Hb_180518_010 Hb_027577_010--Hb_000581_010 Hb_027577_010--Hb_000483_340 Hb_000581_010--Hb_002031_020 Hb_000581_010--Hb_180518_010 Hb_000581_010--Hb_001856_250 Hb_005616_020 Hb_005616_020 Hb_000462_120--Hb_005616_020 Hb_003580_020 Hb_003580_020 Hb_000462_120--Hb_003580_020 Hb_005291_020 Hb_005291_020 Hb_000462_120--Hb_005291_020 Hb_001456_030 Hb_001456_030 Hb_000462_120--Hb_001456_030 Hb_000462_120--Hb_027577_010 Hb_000483_340--Hb_004884_040 Hb_000483_340--Hb_002734_020 Hb_031330_010 Hb_031330_010 Hb_000483_340--Hb_031330_010 Hb_000997_220 Hb_000997_220 Hb_000483_340--Hb_000997_220 Hb_000645_230 Hb_000645_230 Hb_000483_340--Hb_000645_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0690082 0.679387 13.7802 0 0.0595755
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.112598 3.76988

CAGE analysis