Hb_000487_350

Information

Type -
Description -
Location Contig487: 285733-286110
Sequence    

Annotation

kegg
ID rcu:RCOM_1576420
description hypothetical protein
nr
ID XP_002513416.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SGU2
description Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana GN=SAUR71 PE=2 SV=1
trembl
ID B9RI47
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1576420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45032: 286586-287006
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000487_350 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000581_010 0.0085917728 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
3 Hb_027577_010 0.0358139765 - - PREDICTED: uncharacterized protein LOC104779928 [Camelina sativa]
4 Hb_002031_020 0.0517866031 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
5 Hb_180518_010 0.0539766813 - - PREDICTED: receptor-like protein 2 [Jatropha curcas]
6 Hb_001856_250 0.062560423 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
7 Hb_000729_040 0.062848278 - - xyloglucan endotransglucosylase/hydrolase protein 10 precursor [Populus trichocarpa]
8 Hb_000483_340 0.0750418907 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002734_020 0.0759330303 - - PREDICTED: uncharacterized protein LOC105631540 [Jatropha curcas]
10 Hb_000422_090 0.0789017694 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004030_040 0.080758016 - - PREDICTED: protein NRT1/ PTR FAMILY 2.8 [Jatropha curcas]
12 Hb_002785_020 0.0808940806 - - PREDICTED: laccase-4-like [Jatropha curcas]
13 Hb_002757_030 0.0810034329 - - unnamed protein product [Vitis vinifera]
14 Hb_000594_010 0.0853469885 - - PREDICTED: lysine histidine transporter-like 6 isoform X3 [Populus euphratica]
15 Hb_000462_120 0.0864884261 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
16 Hb_009164_010 0.0868218309 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
17 Hb_003788_030 0.0878315494 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
18 Hb_006651_020 0.0884182747 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
19 Hb_004884_040 0.09005824 - - hypothetical protein POPTR_0016s12910g [Populus trichocarpa]
20 Hb_002636_170 0.0914829256 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000487_350 Hb_000487_350 Hb_000581_010 Hb_000581_010 Hb_000487_350--Hb_000581_010 Hb_027577_010 Hb_027577_010 Hb_000487_350--Hb_027577_010 Hb_002031_020 Hb_002031_020 Hb_000487_350--Hb_002031_020 Hb_180518_010 Hb_180518_010 Hb_000487_350--Hb_180518_010 Hb_001856_250 Hb_001856_250 Hb_000487_350--Hb_001856_250 Hb_000729_040 Hb_000729_040 Hb_000487_350--Hb_000729_040 Hb_000581_010--Hb_027577_010 Hb_000581_010--Hb_002031_020 Hb_000581_010--Hb_180518_010 Hb_000581_010--Hb_000729_040 Hb_000581_010--Hb_001856_250 Hb_027577_010--Hb_180518_010 Hb_027577_010--Hb_001856_250 Hb_027577_010--Hb_000729_040 Hb_000483_340 Hb_000483_340 Hb_027577_010--Hb_000483_340 Hb_002031_020--Hb_180518_010 Hb_002031_020--Hb_027577_010 Hb_188281_020 Hb_188281_020 Hb_002031_020--Hb_188281_020 Hb_000188_040 Hb_000188_040 Hb_002031_020--Hb_000188_040 Hb_005291_020 Hb_005291_020 Hb_180518_010--Hb_005291_020 Hb_103468_010 Hb_103468_010 Hb_180518_010--Hb_103468_010 Hb_001856_250--Hb_000483_340 Hb_002734_020 Hb_002734_020 Hb_001856_250--Hb_002734_020 Hb_004884_040 Hb_004884_040 Hb_001856_250--Hb_004884_040 Hb_006651_020 Hb_006651_020 Hb_001856_250--Hb_006651_020 Hb_001856_250--Hb_000729_040 Hb_000462_120 Hb_000462_120 Hb_000729_040--Hb_000462_120 Hb_000729_040--Hb_000483_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.568228 2.92645 109.631 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.21431 26.2166

CAGE analysis