Hb_188281_020

Information

Type -
Description -
Location Contig188281: 17015-17332
Sequence    

Annotation

kegg
ID fve:101298622
description uncharacterized protein LOC101298622
nr
ID XP_012066520.1
description PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067F127
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g044600mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_188281_020 0.0 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
2 Hb_002031_020 0.0720111931 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
3 Hb_003788_030 0.0899109542 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
4 Hb_000581_010 0.0973475613 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
5 Hb_025557_080 0.0995694929 transcription factor TF Family: zf-HD -
6 Hb_025557_070 0.1045364767 transcription factor TF Family: zf-HD hypothetical protein JCGZ_11626 [Jatropha curcas]
7 Hb_000487_350 0.1049698181 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000188_040 0.1107363217 - - PREDICTED: uncharacterized protein LOC105629522 [Jatropha curcas]
9 Hb_000696_130 0.1132125994 - - nucleic acid binding protein, putative [Ricinus communis]
10 Hb_105885_010 0.1136744958 - - PREDICTED: uncharacterized protein LOC103441690 [Malus domestica]
11 Hb_000594_010 0.1169106037 - - PREDICTED: lysine histidine transporter-like 6 isoform X3 [Populus euphratica]
12 Hb_180518_010 0.1196653293 - - PREDICTED: receptor-like protein 2 [Jatropha curcas]
13 Hb_002785_020 0.1218080577 - - PREDICTED: laccase-4-like [Jatropha curcas]
14 Hb_002636_170 0.121986902 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]
15 Hb_005056_040 0.1246165224 - - hypothetical protein POPTR_0007s14730g [Populus trichocarpa]
16 Hb_004449_100 0.125805031 - - -
17 Hb_064047_020 0.1271435763 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
18 Hb_000422_090 0.1271639926 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001935_200 0.1285536757 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
20 Hb_027577_010 0.1292414772 - - PREDICTED: uncharacterized protein LOC104779928 [Camelina sativa]

Gene co-expression network

sample Hb_188281_020 Hb_188281_020 Hb_002031_020 Hb_002031_020 Hb_188281_020--Hb_002031_020 Hb_003788_030 Hb_003788_030 Hb_188281_020--Hb_003788_030 Hb_000581_010 Hb_000581_010 Hb_188281_020--Hb_000581_010 Hb_025557_080 Hb_025557_080 Hb_188281_020--Hb_025557_080 Hb_025557_070 Hb_025557_070 Hb_188281_020--Hb_025557_070 Hb_000487_350 Hb_000487_350 Hb_188281_020--Hb_000487_350 Hb_002031_020--Hb_000581_010 Hb_002031_020--Hb_000487_350 Hb_180518_010 Hb_180518_010 Hb_002031_020--Hb_180518_010 Hb_027577_010 Hb_027577_010 Hb_002031_020--Hb_027577_010 Hb_000188_040 Hb_000188_040 Hb_002031_020--Hb_000188_040 Hb_002785_020 Hb_002785_020 Hb_003788_030--Hb_002785_020 Hb_001935_200 Hb_001935_200 Hb_003788_030--Hb_001935_200 Hb_000684_190 Hb_000684_190 Hb_003788_030--Hb_000684_190 Hb_000422_090 Hb_000422_090 Hb_003788_030--Hb_000422_090 Hb_000696_130 Hb_000696_130 Hb_003788_030--Hb_000696_130 Hb_002636_170 Hb_002636_170 Hb_003788_030--Hb_002636_170 Hb_000581_010--Hb_000487_350 Hb_000581_010--Hb_027577_010 Hb_000581_010--Hb_180518_010 Hb_000729_040 Hb_000729_040 Hb_000581_010--Hb_000729_040 Hb_001856_250 Hb_001856_250 Hb_000581_010--Hb_001856_250 Hb_025557_080--Hb_025557_070 Hb_025161_060 Hb_025161_060 Hb_025557_080--Hb_025161_060 Hb_000291_240 Hb_000291_240 Hb_025557_080--Hb_000291_240 Hb_025557_080--Hb_000188_040 Hb_025557_080--Hb_002031_020 Hb_025557_070--Hb_025161_060 Hb_000046_390 Hb_000046_390 Hb_025557_070--Hb_000046_390 Hb_025557_070--Hb_000188_040 Hb_005116_040 Hb_005116_040 Hb_025557_070--Hb_005116_040 Hb_000487_350--Hb_027577_010 Hb_000487_350--Hb_180518_010 Hb_000487_350--Hb_001856_250 Hb_000487_350--Hb_000729_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.430169 0.111641 24.7354 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.819567 7.33029

CAGE analysis