Hb_005116_040

Information

Type -
Description -
Location Contig5116: 65963-68222
Sequence    

Annotation

kegg
ID pop:POPTR_0005s23040g
description POPTRDRAFT_559544; hypothetical protein
nr
ID XP_011032727.1
description PREDICTED: uncharacterized protein LOC105131445 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9H876
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s23040g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46340: 65790-66413 , PASA_asmbl_46342: 66210-67903
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005116_040 0.0 - - PREDICTED: uncharacterized protein LOC105131445 [Populus euphratica]
2 Hb_000685_100 0.1104090826 - - hypothetical protein POPTR_0001s10630g [Populus trichocarpa]
3 Hb_001019_030 0.1133626396 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
4 Hb_025557_070 0.1159529742 transcription factor TF Family: zf-HD hypothetical protein JCGZ_11626 [Jatropha curcas]
5 Hb_007237_060 0.1254412065 - - -
6 Hb_000917_030 0.1386215987 - - PREDICTED: uncharacterized protein LOC102629571 [Citrus sinensis]
7 Hb_000034_060 0.1454152387 - - PREDICTED: O-acyltransferase WSD1-like [Citrus sinensis]
8 Hb_006386_010 0.1456573684 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
9 Hb_001268_290 0.1500621524 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
10 Hb_001675_020 0.1510063746 - - -
11 Hb_184074_010 0.1512368634 - - PREDICTED: uncharacterized protein LOC105639054 [Jatropha curcas]
12 Hb_000910_030 0.1538357669 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002808_010 0.1541315487 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
14 Hb_025557_080 0.1544442634 transcription factor TF Family: zf-HD -
15 Hb_003212_020 0.1589191259 - - hypothetical protein PHAVU_009G114800g [Phaseolus vulgaris]
16 Hb_001144_030 0.1589551581 - - hypothetical protein CICLE_v10023280mg, partial [Citrus clementina]
17 Hb_003055_100 0.1600024142 - - PREDICTED: uncharacterized protein At5g65660 [Jatropha curcas]
18 Hb_000477_020 0.1613422631 - - hypothetical protein EUGRSUZ_C011052, partial [Eucalyptus grandis]
19 Hb_025161_060 0.1618653494 - - hypothetical protein JCGZ_23770 [Jatropha curcas]
20 Hb_009122_010 0.162717085 - - o-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005116_040 Hb_005116_040 Hb_000685_100 Hb_000685_100 Hb_005116_040--Hb_000685_100 Hb_001019_030 Hb_001019_030 Hb_005116_040--Hb_001019_030 Hb_025557_070 Hb_025557_070 Hb_005116_040--Hb_025557_070 Hb_007237_060 Hb_007237_060 Hb_005116_040--Hb_007237_060 Hb_000917_030 Hb_000917_030 Hb_005116_040--Hb_000917_030 Hb_000034_060 Hb_000034_060 Hb_005116_040--Hb_000034_060 Hb_000685_100--Hb_007237_060 Hb_049438_020 Hb_049438_020 Hb_000685_100--Hb_049438_020 Hb_000685_100--Hb_000034_060 Hb_001856_260 Hb_001856_260 Hb_000685_100--Hb_001856_260 Hb_000237_060 Hb_000237_060 Hb_000685_100--Hb_000237_060 Hb_006386_010 Hb_006386_010 Hb_001019_030--Hb_006386_010 Hb_001268_290 Hb_001268_290 Hb_001019_030--Hb_001268_290 Hb_184074_010 Hb_184074_010 Hb_001019_030--Hb_184074_010 Hb_000334_030 Hb_000334_030 Hb_001019_030--Hb_000334_030 Hb_004930_020 Hb_004930_020 Hb_001019_030--Hb_004930_020 Hb_025557_080 Hb_025557_080 Hb_025557_070--Hb_025557_080 Hb_025161_060 Hb_025161_060 Hb_025557_070--Hb_025161_060 Hb_188281_020 Hb_188281_020 Hb_025557_070--Hb_188281_020 Hb_000046_390 Hb_000046_390 Hb_025557_070--Hb_000046_390 Hb_000188_040 Hb_000188_040 Hb_025557_070--Hb_000188_040 Hb_007237_060--Hb_001856_260 Hb_001675_020 Hb_001675_020 Hb_007237_060--Hb_001675_020 Hb_000327_100 Hb_000327_100 Hb_007237_060--Hb_000327_100 Hb_000086_530 Hb_000086_530 Hb_007237_060--Hb_000086_530 Hb_007237_060--Hb_000237_060 Hb_031579_010 Hb_031579_010 Hb_000917_030--Hb_031579_010 Hb_003055_100 Hb_003055_100 Hb_000917_030--Hb_003055_100 Hb_000917_030--Hb_000034_060 Hb_002031_020 Hb_002031_020 Hb_000917_030--Hb_002031_020 Hb_000633_030 Hb_000633_030 Hb_000917_030--Hb_000633_030 Hb_000034_060--Hb_031579_010 Hb_146036_010 Hb_146036_010 Hb_000034_060--Hb_146036_010 Hb_002370_020 Hb_002370_020 Hb_000034_060--Hb_002370_020 Hb_000910_030 Hb_000910_030 Hb_000034_060--Hb_000910_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.153102 0.119066 5.63218 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.090837 0 0 0.933245 1.81599

CAGE analysis