Hb_146036_010

Information

Type -
Description -
Location Contig146036: 328-1215
Sequence    

Annotation

kegg
ID pop:POPTR_0008s17000g
description POPTRDRAFT_421158; proton-dependent oligopeptide transport family protein
nr
ID KJB28483.1
description hypothetical protein B456_005G052500 [Gossypium raimondii]
swissprot
ID Q9FNL8
description Protein NRT1/ PTR FAMILY 5.3 OS=Arabidopsis thaliana GN=NPF5.3 PE=2 SV=1
trembl
ID A0A0D2PMW3
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G052500 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_146036_010 0.0 - - hypothetical protein B456_005G052500 [Gossypium raimondii]
2 Hb_000186_150 0.063637171 - - PREDICTED: light-induced protein, chloroplastic-like [Nicotiana sylvestris]
3 Hb_003968_030 0.0677190932 - - UDP-glucosyltransferase, putative [Ricinus communis]
4 Hb_001430_040 0.0791223741 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]
5 Hb_000034_060 0.1001783941 - - PREDICTED: O-acyltransferase WSD1-like [Citrus sinensis]
6 Hb_003124_050 0.111692034 - - PREDICTED: uncharacterized protein LOC105641435 [Jatropha curcas]
7 Hb_005332_160 0.1202291022 - - PREDICTED: BAG family molecular chaperone regulator 2-like [Jatropha curcas]
8 Hb_000635_100 0.1226267171 - - -
9 Hb_002370_020 0.1253367936 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
10 Hb_149507_010 0.1255318236 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Malus domestica]
11 Hb_002783_180 0.136164091 - - Tubulin beta-6 chain [Gossypium arboreum]
12 Hb_002566_020 0.136296647 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
13 Hb_003607_090 0.1365909565 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
14 Hb_009456_010 0.1367696406 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X3 [Populus euphratica]
15 Hb_000910_030 0.1413435728 - - conserved hypothetical protein [Ricinus communis]
16 Hb_031579_010 0.1516557235 - - JHL22C18.10 [Jatropha curcas]
17 Hb_049438_020 0.1524684781 - - PREDICTED: peroxidase 20 [Jatropha curcas]
18 Hb_000389_100 0.1531805716 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
19 Hb_001410_080 0.153622443 - - ring finger protein, putative [Ricinus communis]
20 Hb_141194_020 0.1560868395 - - carbohydrate transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_146036_010 Hb_146036_010 Hb_000186_150 Hb_000186_150 Hb_146036_010--Hb_000186_150 Hb_003968_030 Hb_003968_030 Hb_146036_010--Hb_003968_030 Hb_001430_040 Hb_001430_040 Hb_146036_010--Hb_001430_040 Hb_000034_060 Hb_000034_060 Hb_146036_010--Hb_000034_060 Hb_003124_050 Hb_003124_050 Hb_146036_010--Hb_003124_050 Hb_005332_160 Hb_005332_160 Hb_146036_010--Hb_005332_160 Hb_000186_150--Hb_001430_040 Hb_000186_150--Hb_003124_050 Hb_000186_150--Hb_003968_030 Hb_000635_100 Hb_000635_100 Hb_000186_150--Hb_000635_100 Hb_002783_180 Hb_002783_180 Hb_000186_150--Hb_002783_180 Hb_003968_030--Hb_001430_040 Hb_003968_030--Hb_000635_100 Hb_149507_010 Hb_149507_010 Hb_003968_030--Hb_149507_010 Hb_003968_030--Hb_005332_160 Hb_001430_040--Hb_003124_050 Hb_001430_040--Hb_000635_100 Hb_010264_020 Hb_010264_020 Hb_001430_040--Hb_010264_020 Hb_031579_010 Hb_031579_010 Hb_000034_060--Hb_031579_010 Hb_000685_100 Hb_000685_100 Hb_000034_060--Hb_000685_100 Hb_002370_020 Hb_002370_020 Hb_000034_060--Hb_002370_020 Hb_000917_030 Hb_000917_030 Hb_000034_060--Hb_000917_030 Hb_000910_030 Hb_000910_030 Hb_000034_060--Hb_000910_030 Hb_007684_010 Hb_007684_010 Hb_003124_050--Hb_007684_010 Hb_003124_050--Hb_000635_100 Hb_003124_050--Hb_002783_180 Hb_003607_090 Hb_003607_090 Hb_005332_160--Hb_003607_090 Hb_005332_160--Hb_000910_030 Hb_001534_140 Hb_001534_140 Hb_005332_160--Hb_001534_140 Hb_001410_080 Hb_001410_080 Hb_005332_160--Hb_001410_080 Hb_169077_030 Hb_169077_030 Hb_005332_160--Hb_169077_030 Hb_141194_020 Hb_141194_020 Hb_005332_160--Hb_141194_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 3.00813 16.7593 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.30046 6.48119

CAGE analysis