Hb_003607_090

Information

Type -
Description -
Location Contig3607: 99593-105363
Sequence    

Annotation

kegg
ID rcu:RCOM_1721620
description Pectate lyase precursor, putative (EC:4.2.2.2)
nr
ID XP_012085160.1
description PREDICTED: probable pectate lyase 8 [Jatropha curcas]
swissprot
ID Q944R1
description Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1
trembl
ID A0A067JRA4
description Pectate lyase OS=Jatropha curcas GN=JCGZ_17575 PE=3 SV=1
Gene Ontology
ID GO:0030570
description probable pectate lyase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003607_090 0.0 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
2 Hb_000910_030 0.0376402668 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005332_160 0.061219805 - - PREDICTED: BAG family molecular chaperone regulator 2-like [Jatropha curcas]
4 Hb_000163_170 0.0794336031 - - -
5 Hb_000659_050 0.0862422672 - - PREDICTED: basic blue protein-like [Jatropha curcas]
6 Hb_004531_160 0.0902198592 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
7 Hb_002869_090 0.093555431 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
8 Hb_001410_080 0.0967972081 - - ring finger protein, putative [Ricinus communis]
9 Hb_003849_170 0.0978432181 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
10 Hb_000344_030 0.0993776568 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
11 Hb_141194_020 0.0994896511 - - carbohydrate transporter, putative [Ricinus communis]
12 Hb_002600_120 0.1039629514 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
13 Hb_000419_140 0.105256387 - - Aquaporin PIP2.1, putative [Ricinus communis]
14 Hb_002616_020 0.1061107158 - - PREDICTED: peroxidase 3 [Jatropha curcas]
15 Hb_002701_030 0.1103144436 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
16 Hb_003376_140 0.1128130641 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
17 Hb_001534_140 0.1161003065 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
18 Hb_000076_280 0.1189496986 - - PREDICTED: pectinesterase-like [Populus euphratica]
19 Hb_006386_010 0.1203383583 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
20 Hb_010142_060 0.1242617936 - - Blue copper protein precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003607_090 Hb_003607_090 Hb_000910_030 Hb_000910_030 Hb_003607_090--Hb_000910_030 Hb_005332_160 Hb_005332_160 Hb_003607_090--Hb_005332_160 Hb_000163_170 Hb_000163_170 Hb_003607_090--Hb_000163_170 Hb_000659_050 Hb_000659_050 Hb_003607_090--Hb_000659_050 Hb_004531_160 Hb_004531_160 Hb_003607_090--Hb_004531_160 Hb_002869_090 Hb_002869_090 Hb_003607_090--Hb_002869_090 Hb_000910_030--Hb_005332_160 Hb_000910_030--Hb_000659_050 Hb_001410_080 Hb_001410_080 Hb_000910_030--Hb_001410_080 Hb_000344_030 Hb_000344_030 Hb_000910_030--Hb_000344_030 Hb_000910_030--Hb_002869_090 Hb_001534_140 Hb_001534_140 Hb_005332_160--Hb_001534_140 Hb_005332_160--Hb_001410_080 Hb_169077_030 Hb_169077_030 Hb_005332_160--Hb_169077_030 Hb_141194_020 Hb_141194_020 Hb_005332_160--Hb_141194_020 Hb_003849_170 Hb_003849_170 Hb_000163_170--Hb_003849_170 Hb_000163_170--Hb_000910_030 Hb_005144_150 Hb_005144_150 Hb_000163_170--Hb_005144_150 Hb_000163_170--Hb_002869_090 Hb_000163_170--Hb_005332_160 Hb_000659_050--Hb_002869_090 Hb_000659_050--Hb_000344_030 Hb_000327_100 Hb_000327_100 Hb_000659_050--Hb_000327_100 Hb_001675_020 Hb_001675_020 Hb_000659_050--Hb_001675_020 Hb_002616_020 Hb_002616_020 Hb_000659_050--Hb_002616_020 Hb_010142_060 Hb_010142_060 Hb_004531_160--Hb_010142_060 Hb_003376_140 Hb_003376_140 Hb_004531_160--Hb_003376_140 Hb_001079_050 Hb_001079_050 Hb_004531_160--Hb_001079_050 Hb_002600_120 Hb_002600_120 Hb_004531_160--Hb_002600_120 Hb_005648_020 Hb_005648_020 Hb_004531_160--Hb_005648_020 Hb_002869_090--Hb_002616_020 Hb_002869_090--Hb_000327_100 Hb_000352_360 Hb_000352_360 Hb_002869_090--Hb_000352_360 Hb_027400_020 Hb_027400_020 Hb_002869_090--Hb_027400_020 Hb_000561_040 Hb_000561_040 Hb_002869_090--Hb_000561_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0100803 0.521321 2.41487 14.9039 0.0195316 0.00971048
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0229115 0 0 2.34557 3.96062

CAGE analysis