Hb_001675_020

Information

Type -
Description -
Location Contig1675: 14542-14977
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15505: 13744-14084
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001675_020 0.0 - - -
2 Hb_000327_100 0.0550596503 - - hypothetical protein JCGZ_06658 [Jatropha curcas]
3 Hb_000659_050 0.0754222253 - - PREDICTED: basic blue protein-like [Jatropha curcas]
4 Hb_000477_020 0.0765772611 - - hypothetical protein EUGRSUZ_C011052, partial [Eucalyptus grandis]
5 Hb_007403_100 0.0894055555 - - PREDICTED: probable purple acid phosphatase 20 [Jatropha curcas]
6 Hb_002869_090 0.0933773941 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
7 Hb_007237_060 0.0962279503 - - -
8 Hb_002007_330 0.1001862371 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 [Jatropha curcas]
9 Hb_000344_030 0.1016263277 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
10 Hb_003212_020 0.1038522705 - - hypothetical protein PHAVU_009G114800g [Phaseolus vulgaris]
11 Hb_003304_090 0.104443778 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
12 Hb_000561_040 0.1171755521 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
13 Hb_002000_100 0.1242378895 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
14 Hb_001856_260 0.1243987485 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
15 Hb_000352_360 0.1278243237 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
16 Hb_008731_010 0.1278447773 - - hypothetical protein POPTR_0605s00010g [Populus trichocarpa]
17 Hb_000069_150 0.128466874 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
18 Hb_002616_020 0.1324834595 - - PREDICTED: peroxidase 3 [Jatropha curcas]
19 Hb_000910_030 0.1327013593 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000086_530 0.1330756033 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001675_020 Hb_001675_020 Hb_000327_100 Hb_000327_100 Hb_001675_020--Hb_000327_100 Hb_000659_050 Hb_000659_050 Hb_001675_020--Hb_000659_050 Hb_000477_020 Hb_000477_020 Hb_001675_020--Hb_000477_020 Hb_007403_100 Hb_007403_100 Hb_001675_020--Hb_007403_100 Hb_002869_090 Hb_002869_090 Hb_001675_020--Hb_002869_090 Hb_007237_060 Hb_007237_060 Hb_001675_020--Hb_007237_060 Hb_000327_100--Hb_000659_050 Hb_000327_100--Hb_002869_090 Hb_000352_360 Hb_000352_360 Hb_000327_100--Hb_000352_360 Hb_001856_260 Hb_001856_260 Hb_000327_100--Hb_001856_260 Hb_000327_100--Hb_000477_020 Hb_000659_050--Hb_002869_090 Hb_000910_030 Hb_000910_030 Hb_000659_050--Hb_000910_030 Hb_000344_030 Hb_000344_030 Hb_000659_050--Hb_000344_030 Hb_002616_020 Hb_002616_020 Hb_000659_050--Hb_002616_020 Hb_000477_020--Hb_007403_100 Hb_002007_330 Hb_002007_330 Hb_000477_020--Hb_002007_330 Hb_000477_020--Hb_000344_030 Hb_002000_100 Hb_002000_100 Hb_000477_020--Hb_002000_100 Hb_007403_100--Hb_002007_330 Hb_007403_100--Hb_002000_100 Hb_008731_010 Hb_008731_010 Hb_007403_100--Hb_008731_010 Hb_000897_010 Hb_000897_010 Hb_007403_100--Hb_000897_010 Hb_007403_100--Hb_000344_030 Hb_002869_090--Hb_002616_020 Hb_002869_090--Hb_000352_360 Hb_027400_020 Hb_027400_020 Hb_002869_090--Hb_027400_020 Hb_000561_040 Hb_000561_040 Hb_002869_090--Hb_000561_040 Hb_007237_060--Hb_001856_260 Hb_007237_060--Hb_000327_100 Hb_000086_530 Hb_000086_530 Hb_007237_060--Hb_000086_530 Hb_000237_060 Hb_000237_060 Hb_007237_060--Hb_000237_060 Hb_000685_100 Hb_000685_100 Hb_007237_060--Hb_000685_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.15261 0.111641 2.32831 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.468324 0.407238

CAGE analysis