Hb_001856_260

Information

Type -
Description -
Location Contig1856: 312656-313349
Sequence    

Annotation

kegg
ID pop:POPTR_0125s00200g
description hypothetical protein
nr
ID KDP35623.1
description hypothetical protein JCGZ_09061 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KKU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09061 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001856_260 0.0 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
2 Hb_000237_060 0.062279553 - - hypothetical protein PRUPE_ppa022052mg, partial [Prunus persica]
3 Hb_000086_530 0.0761862315 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007237_060 0.088866475 - - -
5 Hb_000327_100 0.096146754 - - hypothetical protein JCGZ_06658 [Jatropha curcas]
6 Hb_049438_020 0.1113988938 - - PREDICTED: peroxidase 20 [Jatropha curcas]
7 Hb_000163_170 0.1187834472 - - -
8 Hb_000659_050 0.1211243052 - - PREDICTED: basic blue protein-like [Jatropha curcas]
9 Hb_001675_020 0.1243987485 - - -
10 Hb_002020_010 0.1271547846 - - kinase-like protein [Corylus avellana]
11 Hb_000685_100 0.1285429935 - - hypothetical protein POPTR_0001s10630g [Populus trichocarpa]
12 Hb_162815_010 0.1299372307 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
13 Hb_002869_090 0.1313467921 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
14 Hb_003607_090 0.1382876784 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
15 Hb_000910_030 0.1383037374 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001616_010 0.1403678971 - - hypothetical protein RCOM_1749890 [Ricinus communis]
17 Hb_000561_040 0.1413509628 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
18 Hb_000034_060 0.1414611536 - - PREDICTED: O-acyltransferase WSD1-like [Citrus sinensis]
19 Hb_005144_150 0.148140869 - - hypothetical protein VITISV_013572 [Vitis vinifera]
20 Hb_000352_360 0.1484013488 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001856_260 Hb_001856_260 Hb_000237_060 Hb_000237_060 Hb_001856_260--Hb_000237_060 Hb_000086_530 Hb_000086_530 Hb_001856_260--Hb_000086_530 Hb_007237_060 Hb_007237_060 Hb_001856_260--Hb_007237_060 Hb_000327_100 Hb_000327_100 Hb_001856_260--Hb_000327_100 Hb_049438_020 Hb_049438_020 Hb_001856_260--Hb_049438_020 Hb_000163_170 Hb_000163_170 Hb_001856_260--Hb_000163_170 Hb_000237_060--Hb_000086_530 Hb_000237_060--Hb_007237_060 Hb_002020_010 Hb_002020_010 Hb_000237_060--Hb_002020_010 Hb_133926_010 Hb_133926_010 Hb_000237_060--Hb_133926_010 Hb_011081_010 Hb_011081_010 Hb_000237_060--Hb_011081_010 Hb_000086_530--Hb_000327_100 Hb_000086_530--Hb_007237_060 Hb_005144_150 Hb_005144_150 Hb_000086_530--Hb_005144_150 Hb_001616_010 Hb_001616_010 Hb_000086_530--Hb_001616_010 Hb_001675_020 Hb_001675_020 Hb_007237_060--Hb_001675_020 Hb_007237_060--Hb_000327_100 Hb_000685_100 Hb_000685_100 Hb_007237_060--Hb_000685_100 Hb_000327_100--Hb_001675_020 Hb_000659_050 Hb_000659_050 Hb_000327_100--Hb_000659_050 Hb_002869_090 Hb_002869_090 Hb_000327_100--Hb_002869_090 Hb_000352_360 Hb_000352_360 Hb_000327_100--Hb_000352_360 Hb_000477_020 Hb_000477_020 Hb_000327_100--Hb_000477_020 Hb_120357_010 Hb_120357_010 Hb_049438_020--Hb_120357_010 Hb_000561_040 Hb_000561_040 Hb_049438_020--Hb_000561_040 Hb_000389_100 Hb_000389_100 Hb_049438_020--Hb_000389_100 Hb_162815_010 Hb_162815_010 Hb_049438_020--Hb_162815_010 Hb_049438_020--Hb_000685_100 Hb_003607_090 Hb_003607_090 Hb_000163_170--Hb_003607_090 Hb_003849_170 Hb_003849_170 Hb_000163_170--Hb_003849_170 Hb_000910_030 Hb_000910_030 Hb_000163_170--Hb_000910_030 Hb_000163_170--Hb_005144_150 Hb_000163_170--Hb_002869_090 Hb_005332_160 Hb_005332_160 Hb_000163_170--Hb_005332_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.224568 2.43115 33.3093 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.89427 5.00906

CAGE analysis