Hb_011081_010

Information

Type -
Description -
Location Contig11081: 7303-7667
Sequence    

Annotation

kegg
ID rcu:RCOM_0163010
description hypothetical protein
nr
ID CDP05881.1
description unnamed protein product [Coffea canephora]
swissprot
ID -
description -
trembl
ID A0A068UBM3
description Coffea canephora DH200=94 genomic scaffold, scaffold_19 OS=Coffea canephora GN=GSCOC_T00021192001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011081_010 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_141096_010 0.0172165979 - - PREDICTED: zinc finger CCCH domain-containing protein 55-like [Jatropha curcas]
3 Hb_133926_010 0.045323366 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
4 Hb_103468_010 0.0864560916 - - protein binding protein, putative [Ricinus communis]
5 Hb_014834_100 0.1078387338 - - PREDICTED: probable aquaporin TIP-type [Gossypium raimondii]
6 Hb_180518_010 0.1096785676 - - PREDICTED: receptor-like protein 2 [Jatropha curcas]
7 Hb_001557_030 0.1098697641 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
8 Hb_005291_020 0.1100490741 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000868_020 0.1144533254 - - -
10 Hb_003528_090 0.1187195013 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
11 Hb_003060_020 0.1194707883 - - serine carboxypeptidase, putative [Ricinus communis]
12 Hb_003152_010 0.1196568321 - - -
13 Hb_027577_010 0.1218356887 - - PREDICTED: uncharacterized protein LOC104779928 [Camelina sativa]
14 Hb_002020_010 0.1279943916 - - kinase-like protein [Corylus avellana]
15 Hb_000237_060 0.128504698 - - hypothetical protein PRUPE_ppa022052mg, partial [Prunus persica]
16 Hb_015183_090 0.1305533746 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
17 Hb_001433_230 0.131213909 - - PREDICTED: kinesin-4-like [Jatropha curcas]
18 Hb_000107_240 0.1321446115 - - organic anion transporter, putative [Ricinus communis]
19 Hb_153544_020 0.1346041078 transcription factor TF Family: TCP PREDICTED: transcription factor TCP12 [Jatropha curcas]
20 Hb_000614_300 0.136477557 - - PREDICTED: BAHD acyltransferase At5g47980-like [Jatropha curcas]

Gene co-expression network

sample Hb_011081_010 Hb_011081_010 Hb_141096_010 Hb_141096_010 Hb_011081_010--Hb_141096_010 Hb_133926_010 Hb_133926_010 Hb_011081_010--Hb_133926_010 Hb_103468_010 Hb_103468_010 Hb_011081_010--Hb_103468_010 Hb_014834_100 Hb_014834_100 Hb_011081_010--Hb_014834_100 Hb_180518_010 Hb_180518_010 Hb_011081_010--Hb_180518_010 Hb_001557_030 Hb_001557_030 Hb_011081_010--Hb_001557_030 Hb_141096_010--Hb_133926_010 Hb_141096_010--Hb_103468_010 Hb_141096_010--Hb_001557_030 Hb_141096_010--Hb_014834_100 Hb_003152_010 Hb_003152_010 Hb_141096_010--Hb_003152_010 Hb_133926_010--Hb_180518_010 Hb_133926_010--Hb_103468_010 Hb_027577_010 Hb_027577_010 Hb_133926_010--Hb_027577_010 Hb_000868_020 Hb_000868_020 Hb_133926_010--Hb_000868_020 Hb_003060_020 Hb_003060_020 Hb_103468_010--Hb_003060_020 Hb_103468_010--Hb_014834_100 Hb_006249_010 Hb_006249_010 Hb_103468_010--Hb_006249_010 Hb_103468_010--Hb_027577_010 Hb_103468_010--Hb_000868_020 Hb_103468_010--Hb_180518_010 Hb_014834_100--Hb_001557_030 Hb_011224_030 Hb_011224_030 Hb_014834_100--Hb_011224_030 Hb_001433_230 Hb_001433_230 Hb_014834_100--Hb_001433_230 Hb_150179_010 Hb_150179_010 Hb_014834_100--Hb_150179_010 Hb_002073_210 Hb_002073_210 Hb_014834_100--Hb_002073_210 Hb_180518_010--Hb_027577_010 Hb_000581_010 Hb_000581_010 Hb_180518_010--Hb_000581_010 Hb_000487_350 Hb_000487_350 Hb_180518_010--Hb_000487_350 Hb_002031_020 Hb_002031_020 Hb_180518_010--Hb_002031_020 Hb_005291_020 Hb_005291_020 Hb_180518_010--Hb_005291_020 Hb_001557_030--Hb_150179_010 Hb_001557_030--Hb_011224_030 Hb_007007_140 Hb_007007_140 Hb_001557_030--Hb_007007_140 Hb_001887_010 Hb_001887_010 Hb_001557_030--Hb_001887_010 Hb_029584_030 Hb_029584_030 Hb_001557_030--Hb_029584_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.515487 8.57501 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.314367 1.00962

CAGE analysis