Hb_002073_210

Information

Type -
Description -
Location Contig2073: 141688-142005
Sequence    

Annotation

kegg
ID rcu:RCOM_0699300
description hypothetical protein
nr
ID XP_002520185.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O04547
description CLAVATA3/ESR (CLE)-related protein 26 OS=Arabidopsis thaliana GN=CLE26 PE=2 SV=1
trembl
ID B9S2G6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0699300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21388: 140277-142110
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002073_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_151436_010 0.0477768956 - - PREDICTED: uncharacterized protein LOC105137019 [Populus euphratica]
3 Hb_000331_380 0.0574634613 - - hypothetical protein POPTR_0012s09560g [Populus trichocarpa]
4 Hb_006970_180 0.058412511 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
5 Hb_000431_050 0.0590168964 - - conserved hypothetical protein [Ricinus communis]
6 Hb_022250_140 0.0639348542 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
7 Hb_000352_210 0.0675087105 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
8 Hb_003152_010 0.0707288097 - - -
9 Hb_004732_080 0.072491841 - - PREDICTED: germin-like protein subfamily 3 member 2 [Populus euphratica]
10 Hb_001634_050 0.0726273608 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
11 Hb_006570_170 0.0762334402 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
12 Hb_085158_010 0.0768515172 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
13 Hb_006249_010 0.077181412 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
14 Hb_001557_030 0.0772200204 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
15 Hb_001887_010 0.0787143778 - - mta/sah nucleosidase, putative [Ricinus communis]
16 Hb_150179_010 0.0797156044 - - hypothetical protein JCGZ_21079 [Jatropha curcas]
17 Hb_000307_160 0.0812562168 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
18 Hb_014834_100 0.082263997 - - PREDICTED: probable aquaporin TIP-type [Gossypium raimondii]
19 Hb_011224_030 0.0831486724 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
20 Hb_004396_020 0.0848678593 - - SAUR-like auxin-responsive protein family [Theobroma cacao]

Gene co-expression network

sample Hb_002073_210 Hb_002073_210 Hb_151436_010 Hb_151436_010 Hb_002073_210--Hb_151436_010 Hb_000331_380 Hb_000331_380 Hb_002073_210--Hb_000331_380 Hb_006970_180 Hb_006970_180 Hb_002073_210--Hb_006970_180 Hb_000431_050 Hb_000431_050 Hb_002073_210--Hb_000431_050 Hb_022250_140 Hb_022250_140 Hb_002073_210--Hb_022250_140 Hb_000352_210 Hb_000352_210 Hb_002073_210--Hb_000352_210 Hb_151436_010--Hb_006970_180 Hb_151436_010--Hb_000431_050 Hb_085158_010 Hb_085158_010 Hb_151436_010--Hb_085158_010 Hb_151436_010--Hb_022250_140 Hb_006603_010 Hb_006603_010 Hb_151436_010--Hb_006603_010 Hb_000331_380--Hb_000352_210 Hb_000331_380--Hb_000431_050 Hb_004396_020 Hb_004396_020 Hb_000331_380--Hb_004396_020 Hb_000392_080 Hb_000392_080 Hb_000331_380--Hb_000392_080 Hb_007007_140 Hb_007007_140 Hb_000331_380--Hb_007007_140 Hb_006970_180--Hb_022250_140 Hb_006970_180--Hb_085158_010 Hb_006970_180--Hb_000431_050 Hb_006970_180--Hb_006603_010 Hb_000431_050--Hb_085158_010 Hb_000431_050--Hb_000352_210 Hb_006570_170 Hb_006570_170 Hb_022250_140--Hb_006570_170 Hb_006816_060 Hb_006816_060 Hb_022250_140--Hb_006816_060 Hb_001634_050 Hb_001634_050 Hb_022250_140--Hb_001634_050 Hb_000352_210--Hb_000392_080 Hb_000352_210--Hb_004396_020 Hb_003152_010 Hb_003152_010 Hb_000352_210--Hb_003152_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.12495 1.99316 26.1689 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.03619

CAGE analysis