Hb_001634_050

Information

Type -
Description -
Location Contig1634: 20406-35097
Sequence    

Annotation

kegg
ID rcu:RCOM_0550230
description hypothetical protein
nr
ID XP_012064848.1
description PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
swissprot
ID Q8LEJ6
description Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana GN=FLA11 PE=2 SV=2
trembl
ID A0A067L6L7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05539 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001634_050 0.0 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
2 Hb_006570_170 0.0432138859 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
3 Hb_005396_020 0.0436559991 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
4 Hb_012180_070 0.0504369805 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000107_240 0.0513027121 - - organic anion transporter, putative [Ricinus communis]
6 Hb_006249_010 0.0536184133 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
7 Hb_022250_140 0.0601073918 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
8 Hb_000816_090 0.0647278088 transcription factor TF Family: TRAF protein binding protein, putative [Ricinus communis]
9 Hb_003060_020 0.0664573806 - - serine carboxypeptidase, putative [Ricinus communis]
10 Hb_002073_210 0.0726273608 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001401_130 0.0739873151 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
12 Hb_000307_160 0.077303316 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
13 Hb_006970_180 0.0776145947 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
14 Hb_003528_090 0.077696105 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
15 Hb_151436_010 0.0790848974 - - PREDICTED: uncharacterized protein LOC105137019 [Populus euphratica]
16 Hb_001433_230 0.0791812439 - - PREDICTED: kinesin-4-like [Jatropha curcas]
17 Hb_006816_060 0.0809978512 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
18 Hb_103468_010 0.0814601221 - - protein binding protein, putative [Ricinus communis]
19 Hb_000429_070 0.0825224858 - - hypothetical protein POPTR_0006s05480g [Populus trichocarpa]
20 Hb_006889_010 0.0835976839 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_001634_050 Hb_001634_050 Hb_006570_170 Hb_006570_170 Hb_001634_050--Hb_006570_170 Hb_005396_020 Hb_005396_020 Hb_001634_050--Hb_005396_020 Hb_012180_070 Hb_012180_070 Hb_001634_050--Hb_012180_070 Hb_000107_240 Hb_000107_240 Hb_001634_050--Hb_000107_240 Hb_006249_010 Hb_006249_010 Hb_001634_050--Hb_006249_010 Hb_022250_140 Hb_022250_140 Hb_001634_050--Hb_022250_140 Hb_006570_170--Hb_022250_140 Hb_000816_090 Hb_000816_090 Hb_006570_170--Hb_000816_090 Hb_006570_170--Hb_005396_020 Hb_006570_170--Hb_006249_010 Hb_006570_170--Hb_012180_070 Hb_005396_020--Hb_000816_090 Hb_005396_020--Hb_012180_070 Hb_003060_020 Hb_003060_020 Hb_005396_020--Hb_003060_020 Hb_003528_090 Hb_003528_090 Hb_005396_020--Hb_003528_090 Hb_001386_070 Hb_001386_070 Hb_012180_070--Hb_001386_070 Hb_001401_130 Hb_001401_130 Hb_012180_070--Hb_001401_130 Hb_000429_070 Hb_000429_070 Hb_012180_070--Hb_000429_070 Hb_012180_070--Hb_000107_240 Hb_000107_240--Hb_006249_010 Hb_000307_160 Hb_000307_160 Hb_000107_240--Hb_000307_160 Hb_000868_020 Hb_000868_020 Hb_000107_240--Hb_000868_020 Hb_000107_240--Hb_001401_130 Hb_000318_500 Hb_000318_500 Hb_006249_010--Hb_000318_500 Hb_103468_010 Hb_103468_010 Hb_006249_010--Hb_103468_010 Hb_006249_010--Hb_000868_020 Hb_006970_180 Hb_006970_180 Hb_022250_140--Hb_006970_180 Hb_006816_060 Hb_006816_060 Hb_022250_140--Hb_006816_060 Hb_151436_010 Hb_151436_010 Hb_022250_140--Hb_151436_010 Hb_002073_210 Hb_002073_210 Hb_022250_140--Hb_002073_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0446105 0.814463 3.18975 77.2378 0.0178666 0.0319019
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0202642 0.015945 0 0.0633808 6.85921

CAGE analysis