Hb_005396_020

Information

Type -
Description -
Location Contig5396: 8811-9280
Sequence    

Annotation

kegg
ID cic:CICLE_v10033278mg
description hypothetical protein
nr
ID XP_006437764.1
description hypothetical protein CICLE_v10033278mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID A0A067G365
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035400mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47753: 8760-9271
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005396_020 0.0 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
2 Hb_001634_050 0.0436559991 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
3 Hb_000816_090 0.0536842909 transcription factor TF Family: TRAF protein binding protein, putative [Ricinus communis]
4 Hb_012180_070 0.0554593732 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003060_020 0.0557706312 - - serine carboxypeptidase, putative [Ricinus communis]
6 Hb_006570_170 0.0587630023 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
7 Hb_003528_090 0.0671072166 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
8 Hb_022250_140 0.067772759 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
9 Hb_000628_070 0.0711292941 - - -
10 Hb_006816_060 0.0719124798 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
11 Hb_000327_350 0.0761753626 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
12 Hb_001157_120 0.0778437365 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
13 Hb_000107_240 0.0783305483 - - organic anion transporter, putative [Ricinus communis]
14 Hb_001401_130 0.0793730835 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
15 Hb_006249_010 0.0798992901 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
16 Hb_000244_290 0.0803467413 - - PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 [Jatropha curcas]
17 Hb_001433_230 0.081108867 - - PREDICTED: kinesin-4-like [Jatropha curcas]
18 Hb_001386_070 0.0862022708 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Jatropha curcas]
19 Hb_000012_340 0.0868308394 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
20 Hb_103468_010 0.0881433573 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005396_020 Hb_005396_020 Hb_001634_050 Hb_001634_050 Hb_005396_020--Hb_001634_050 Hb_000816_090 Hb_000816_090 Hb_005396_020--Hb_000816_090 Hb_012180_070 Hb_012180_070 Hb_005396_020--Hb_012180_070 Hb_003060_020 Hb_003060_020 Hb_005396_020--Hb_003060_020 Hb_006570_170 Hb_006570_170 Hb_005396_020--Hb_006570_170 Hb_003528_090 Hb_003528_090 Hb_005396_020--Hb_003528_090 Hb_001634_050--Hb_006570_170 Hb_001634_050--Hb_012180_070 Hb_000107_240 Hb_000107_240 Hb_001634_050--Hb_000107_240 Hb_006249_010 Hb_006249_010 Hb_001634_050--Hb_006249_010 Hb_022250_140 Hb_022250_140 Hb_001634_050--Hb_022250_140 Hb_000816_090--Hb_003060_020 Hb_000327_350 Hb_000327_350 Hb_000816_090--Hb_000327_350 Hb_000816_090--Hb_006570_170 Hb_000816_090--Hb_003528_090 Hb_000816_090--Hb_001634_050 Hb_001386_070 Hb_001386_070 Hb_012180_070--Hb_001386_070 Hb_001401_130 Hb_001401_130 Hb_012180_070--Hb_001401_130 Hb_000429_070 Hb_000429_070 Hb_012180_070--Hb_000429_070 Hb_012180_070--Hb_000107_240 Hb_003060_020--Hb_003528_090 Hb_003060_020--Hb_000327_350 Hb_103468_010 Hb_103468_010 Hb_003060_020--Hb_103468_010 Hb_003060_020--Hb_001634_050 Hb_006570_170--Hb_022250_140 Hb_006570_170--Hb_006249_010 Hb_006570_170--Hb_012180_070 Hb_001157_120 Hb_001157_120 Hb_003528_090--Hb_001157_120 Hb_003528_090--Hb_001401_130 Hb_003528_090--Hb_000327_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.70471 73.1951 146.435 4027.82 3.17653 10.4345
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.15659 0.363463 0 12.9897 372.611

CAGE analysis