Hb_000107_240

Information

Type -
Description -
Location Contig107: 170591-172408
Sequence    

Annotation

kegg
ID rcu:RCOM_1563490
description organic anion transporter, putative
nr
ID XP_002514380.1
description organic anion transporter, putative [Ricinus communis]
swissprot
ID Q9SRE4
description UDP-galactose transporter 2 OS=Arabidopsis thaliana GN=UDP-GALT2 PE=2 SV=1
trembl
ID B9RKW1
description Organic anion transporter, putative OS=Ricinus communis GN=RCOM_1563490 PE=4 SV=1
Gene Ontology
ID GO:0016021
description udp-galactose transporter 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02162: 171368-172290 , PASA_asmbl_02163: 171675-172290
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_240 0.0 - - organic anion transporter, putative [Ricinus communis]
2 Hb_001634_050 0.0513027121 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
3 Hb_006249_010 0.0576290729 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
4 Hb_000307_160 0.0616826538 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
5 Hb_000868_020 0.063154691 - - -
6 Hb_012180_070 0.0634179822 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001401_130 0.0710598895 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
8 Hb_000485_050 0.0735176124 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
9 Hb_000429_070 0.075096039 - - hypothetical protein POPTR_0006s05480g [Populus trichocarpa]
10 Hb_103468_010 0.0778893672 - - protein binding protein, putative [Ricinus communis]
11 Hb_005396_020 0.0783305483 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
12 Hb_006570_170 0.0800757559 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
13 Hb_000028_090 0.0815845399 - - PREDICTED: uncharacterized protein LOC105135810 [Populus euphratica]
14 Hb_003528_090 0.0823110501 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
15 Hb_004162_150 0.0825525729 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
16 Hb_003060_020 0.0828811802 - - serine carboxypeptidase, putative [Ricinus communis]
17 Hb_027472_250 0.0853963304 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
18 Hb_001386_070 0.0869467514 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Jatropha curcas]
19 Hb_010327_060 0.0876614098 - - hypothetical protein B456_001G246300 [Gossypium raimondii]
20 Hb_009620_080 0.0891191438 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]

Gene co-expression network

sample Hb_000107_240 Hb_000107_240 Hb_001634_050 Hb_001634_050 Hb_000107_240--Hb_001634_050 Hb_006249_010 Hb_006249_010 Hb_000107_240--Hb_006249_010 Hb_000307_160 Hb_000307_160 Hb_000107_240--Hb_000307_160 Hb_000868_020 Hb_000868_020 Hb_000107_240--Hb_000868_020 Hb_012180_070 Hb_012180_070 Hb_000107_240--Hb_012180_070 Hb_001401_130 Hb_001401_130 Hb_000107_240--Hb_001401_130 Hb_006570_170 Hb_006570_170 Hb_001634_050--Hb_006570_170 Hb_005396_020 Hb_005396_020 Hb_001634_050--Hb_005396_020 Hb_001634_050--Hb_012180_070 Hb_001634_050--Hb_006249_010 Hb_022250_140 Hb_022250_140 Hb_001634_050--Hb_022250_140 Hb_000318_500 Hb_000318_500 Hb_006249_010--Hb_000318_500 Hb_006249_010--Hb_006570_170 Hb_103468_010 Hb_103468_010 Hb_006249_010--Hb_103468_010 Hb_006249_010--Hb_000868_020 Hb_004162_150 Hb_004162_150 Hb_000307_160--Hb_004162_150 Hb_000485_050 Hb_000485_050 Hb_000307_160--Hb_000485_050 Hb_000307_160--Hb_000868_020 Hb_003925_010 Hb_003925_010 Hb_000307_160--Hb_003925_010 Hb_000307_160--Hb_006249_010 Hb_010327_060 Hb_010327_060 Hb_000868_020--Hb_010327_060 Hb_000028_090 Hb_000028_090 Hb_000868_020--Hb_000028_090 Hb_002757_040 Hb_002757_040 Hb_000868_020--Hb_002757_040 Hb_012180_070--Hb_005396_020 Hb_001386_070 Hb_001386_070 Hb_012180_070--Hb_001386_070 Hb_012180_070--Hb_001401_130 Hb_000429_070 Hb_000429_070 Hb_012180_070--Hb_000429_070 Hb_001401_130--Hb_000429_070 Hb_001401_130--Hb_001386_070 Hb_003528_090 Hb_003528_090 Hb_001401_130--Hb_003528_090 Hb_002186_190 Hb_002186_190 Hb_001401_130--Hb_002186_190 Hb_000012_340 Hb_000012_340 Hb_001401_130--Hb_000012_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0475544 0.0951883 0.97723 30.1374 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0380569 0 0.0458728 2.88816

CAGE analysis