Hb_002757_040

Information

Type -
Description -
Location Contig2757: 10809-11370
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0016746
description o-acyltransferase wsd1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28844: 10801-11409
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002757_040 0.0 - - -
2 Hb_010327_060 0.029437621 - - hypothetical protein B456_001G246300 [Gossypium raimondii]
3 Hb_000028_090 0.0461611349 - - PREDICTED: uncharacterized protein LOC105135810 [Populus euphratica]
4 Hb_002757_030 0.0511254811 - - unnamed protein product [Vitis vinifera]
5 Hb_009164_010 0.0562053013 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
6 Hb_009620_080 0.0568645873 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
7 Hb_000868_020 0.0632467124 - - -
8 Hb_004030_040 0.0652111708 - - PREDICTED: protein NRT1/ PTR FAMILY 2.8 [Jatropha curcas]
9 Hb_027472_250 0.0678995424 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
10 Hb_000521_030 0.0756989772 - - PREDICTED: uncharacterized protein LOC105650350 [Jatropha curcas]
11 Hb_153544_020 0.0780716966 transcription factor TF Family: TCP PREDICTED: transcription factor TCP12 [Jatropha curcas]
12 Hb_006651_020 0.0817180314 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
13 Hb_005841_070 0.0818393222 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000485_050 0.0865309383 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
15 Hb_000480_020 0.0878274607 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010833_010 0.0882398532 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
17 Hb_000155_130 0.0907368994 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006249_010 0.0911069027 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
19 Hb_009767_040 0.1000783311 - - PREDICTED: uncharacterized protein LOC105127022 [Populus euphratica]
20 Hb_000107_240 0.100164251 - - organic anion transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_002757_040 Hb_002757_040 Hb_010327_060 Hb_010327_060 Hb_002757_040--Hb_010327_060 Hb_000028_090 Hb_000028_090 Hb_002757_040--Hb_000028_090 Hb_002757_030 Hb_002757_030 Hb_002757_040--Hb_002757_030 Hb_009164_010 Hb_009164_010 Hb_002757_040--Hb_009164_010 Hb_009620_080 Hb_009620_080 Hb_002757_040--Hb_009620_080 Hb_000868_020 Hb_000868_020 Hb_002757_040--Hb_000868_020 Hb_010327_060--Hb_000868_020 Hb_010327_060--Hb_002757_030 Hb_153544_020 Hb_153544_020 Hb_010327_060--Hb_153544_020 Hb_010327_060--Hb_000028_090 Hb_004030_040 Hb_004030_040 Hb_010327_060--Hb_004030_040 Hb_000028_090--Hb_009620_080 Hb_027472_250 Hb_027472_250 Hb_000028_090--Hb_027472_250 Hb_000485_050 Hb_000485_050 Hb_000028_090--Hb_000485_050 Hb_000028_090--Hb_000868_020 Hb_002757_030--Hb_004030_040 Hb_002757_030--Hb_009164_010 Hb_006651_020 Hb_006651_020 Hb_002757_030--Hb_006651_020 Hb_002757_030--Hb_153544_020 Hb_009164_010--Hb_004030_040 Hb_000594_010 Hb_000594_010 Hb_009164_010--Hb_000594_010 Hb_009164_010--Hb_010327_060 Hb_009164_010--Hb_006651_020 Hb_009620_080--Hb_027472_250 Hb_009620_080--Hb_000485_050 Hb_009620_080--Hb_010327_060 Hb_003925_010 Hb_003925_010 Hb_009620_080--Hb_003925_010 Hb_000107_240 Hb_000107_240 Hb_000868_020--Hb_000107_240 Hb_000307_160 Hb_000307_160 Hb_000868_020--Hb_000307_160 Hb_006249_010 Hb_006249_010 Hb_000868_020--Hb_006249_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.55686 100.727 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 16.1299

CAGE analysis