Hb_003925_010

Information

Type -
Description -
Location Contig3925: 6490-10457
Sequence    

Annotation

kegg
ID rcu:RCOM_0750280
description Polygalacturonase precursor, putative (EC:3.2.1.67)
nr
ID XP_002529616.1
description Polygalacturonase precursor, putative [Ricinus communis]
swissprot
ID P35336
description Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1
trembl
ID B9SUE7
description Polygalacturonase, putative OS=Ricinus communis GN=RCOM_0750280 PE=3 SV=1
Gene Ontology
ID GO:0004650
description polygalacturonase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39321: 10091-10480
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003925_010 0.0 - - Polygalacturonase precursor, putative [Ricinus communis]
2 Hb_000485_050 0.0416860035 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
3 Hb_000637_090 0.0553971244 - - hypothetical protein JCGZ_05877 [Jatropha curcas]
4 Hb_027472_250 0.0582705365 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
5 Hb_007677_010 0.060678935 - - PREDICTED: uncharacterized protein LOC105641028 [Jatropha curcas]
6 Hb_004162_150 0.0646270086 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
7 Hb_000429_070 0.0659757175 - - hypothetical protein POPTR_0006s05480g [Populus trichocarpa]
8 Hb_009620_080 0.0699554304 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
9 Hb_000307_160 0.0710605023 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
10 Hb_001956_170 0.0724416621 - - hypothetical protein POPTR_0001s24950g [Populus trichocarpa]
11 Hb_000028_090 0.0748223873 - - PREDICTED: uncharacterized protein LOC105135810 [Populus euphratica]
12 Hb_009470_010 0.0778284349 - - -
13 Hb_001401_130 0.0788939014 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
14 Hb_001386_070 0.0840204352 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Jatropha curcas]
15 Hb_012180_070 0.090627549 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002186_190 0.0919435396 - - -
17 Hb_000107_240 0.0945808766 - - organic anion transporter, putative [Ricinus communis]
18 Hb_009896_010 0.098040784 - - ABC transporter G family member 15 [Morus notabilis]
19 Hb_000868_020 0.1020538885 - - -
20 Hb_015183_090 0.1031612686 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]

Gene co-expression network

sample Hb_003925_010 Hb_003925_010 Hb_000485_050 Hb_000485_050 Hb_003925_010--Hb_000485_050 Hb_000637_090 Hb_000637_090 Hb_003925_010--Hb_000637_090 Hb_027472_250 Hb_027472_250 Hb_003925_010--Hb_027472_250 Hb_007677_010 Hb_007677_010 Hb_003925_010--Hb_007677_010 Hb_004162_150 Hb_004162_150 Hb_003925_010--Hb_004162_150 Hb_000429_070 Hb_000429_070 Hb_003925_010--Hb_000429_070 Hb_000485_050--Hb_027472_250 Hb_009620_080 Hb_009620_080 Hb_000485_050--Hb_009620_080 Hb_000028_090 Hb_000028_090 Hb_000485_050--Hb_000028_090 Hb_000307_160 Hb_000307_160 Hb_000485_050--Hb_000307_160 Hb_000485_050--Hb_004162_150 Hb_000637_090--Hb_007677_010 Hb_001956_170 Hb_001956_170 Hb_000637_090--Hb_001956_170 Hb_009896_010 Hb_009896_010 Hb_000637_090--Hb_009896_010 Hb_009470_010 Hb_009470_010 Hb_000637_090--Hb_009470_010 Hb_002186_190 Hb_002186_190 Hb_000637_090--Hb_002186_190 Hb_027472_250--Hb_009620_080 Hb_027472_250--Hb_000028_090 Hb_002757_040 Hb_002757_040 Hb_027472_250--Hb_002757_040 Hb_027472_250--Hb_000429_070 Hb_007677_010--Hb_001956_170 Hb_007677_010--Hb_009470_010 Hb_007677_010--Hb_009896_010 Hb_007677_010--Hb_002186_190 Hb_004162_150--Hb_000307_160 Hb_015183_090 Hb_015183_090 Hb_004162_150--Hb_015183_090 Hb_000431_050 Hb_000431_050 Hb_004162_150--Hb_000431_050 Hb_000115_210 Hb_000115_210 Hb_004162_150--Hb_000115_210 Hb_001401_130 Hb_001401_130 Hb_000429_070--Hb_001401_130 Hb_001386_070 Hb_001386_070 Hb_000429_070--Hb_001386_070 Hb_012180_070 Hb_012180_070 Hb_000429_070--Hb_012180_070 Hb_000429_070--Hb_000485_050 Hb_000429_070--Hb_002186_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.101018 7.84604 0 0.0147013
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.489745

CAGE analysis