Hb_004162_150

Information

Type -
Description -
Location Contig4162: 149878-150234
Sequence    

Annotation

kegg
ID pop:POPTR_0009s00870g
description POPTRDRAFT_558341; hypothetical protein
nr
ID XP_002314312.2
description hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
swissprot
ID Q9LZ60
description Cyclin-dependent protein kinase inhibitor SMR3 OS=Arabidopsis thaliana GN=SMR3 PE=2 SV=1
trembl
ID B9HQQ8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s00870g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004162_150 0.0 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
2 Hb_000307_160 0.0387449122 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
3 Hb_000485_050 0.061798411 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
4 Hb_003925_010 0.0646270086 - - Polygalacturonase precursor, putative [Ricinus communis]
5 Hb_015183_090 0.0666591774 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
6 Hb_000431_050 0.0766707875 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000115_210 0.0771063106 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 3-like [Jatropha curcas]
8 Hb_000429_070 0.0818543583 - - hypothetical protein POPTR_0006s05480g [Populus trichocarpa]
9 Hb_000637_090 0.0820920986 - - hypothetical protein JCGZ_05877 [Jatropha curcas]
10 Hb_000107_240 0.0825525729 - - organic anion transporter, putative [Ricinus communis]
11 Hb_000331_380 0.0830675466 - - hypothetical protein POPTR_0012s09560g [Populus trichocarpa]
12 Hb_085158_010 0.0848283036 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
13 Hb_005539_330 0.0902639018 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]
14 Hb_002073_210 0.0909478624 - - conserved hypothetical protein [Ricinus communis]
15 Hb_027472_250 0.0914849014 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
16 Hb_001634_050 0.0917493895 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
17 Hb_001401_130 0.0921161608 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
18 Hb_007677_010 0.0953135124 - - PREDICTED: uncharacterized protein LOC105641028 [Jatropha curcas]
19 Hb_009470_010 0.096341514 - - -
20 Hb_012180_070 0.0970911305 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004162_150 Hb_004162_150 Hb_000307_160 Hb_000307_160 Hb_004162_150--Hb_000307_160 Hb_000485_050 Hb_000485_050 Hb_004162_150--Hb_000485_050 Hb_003925_010 Hb_003925_010 Hb_004162_150--Hb_003925_010 Hb_015183_090 Hb_015183_090 Hb_004162_150--Hb_015183_090 Hb_000431_050 Hb_000431_050 Hb_004162_150--Hb_000431_050 Hb_000115_210 Hb_000115_210 Hb_004162_150--Hb_000115_210 Hb_000307_160--Hb_000485_050 Hb_000107_240 Hb_000107_240 Hb_000307_160--Hb_000107_240 Hb_000868_020 Hb_000868_020 Hb_000307_160--Hb_000868_020 Hb_000307_160--Hb_003925_010 Hb_006249_010 Hb_006249_010 Hb_000307_160--Hb_006249_010 Hb_027472_250 Hb_027472_250 Hb_000485_050--Hb_027472_250 Hb_000485_050--Hb_003925_010 Hb_009620_080 Hb_009620_080 Hb_000485_050--Hb_009620_080 Hb_000028_090 Hb_000028_090 Hb_000485_050--Hb_000028_090 Hb_000637_090 Hb_000637_090 Hb_003925_010--Hb_000637_090 Hb_003925_010--Hb_027472_250 Hb_007677_010 Hb_007677_010 Hb_003925_010--Hb_007677_010 Hb_000429_070 Hb_000429_070 Hb_003925_010--Hb_000429_070 Hb_000352_210 Hb_000352_210 Hb_015183_090--Hb_000352_210 Hb_000331_380 Hb_000331_380 Hb_015183_090--Hb_000331_380 Hb_015183_090--Hb_000431_050 Hb_015183_090--Hb_000307_160 Hb_003152_010 Hb_003152_010 Hb_015183_090--Hb_003152_010 Hb_085158_010 Hb_085158_010 Hb_000431_050--Hb_085158_010 Hb_151436_010 Hb_151436_010 Hb_000431_050--Hb_151436_010 Hb_000431_050--Hb_000331_380 Hb_006970_180 Hb_006970_180 Hb_000431_050--Hb_006970_180 Hb_002073_210 Hb_002073_210 Hb_000431_050--Hb_002073_210 Hb_000431_050--Hb_000352_210 Hb_000115_210--Hb_000307_160 Hb_005015_090 Hb_005015_090 Hb_000115_210--Hb_005015_090 Hb_000115_210--Hb_015183_090 Hb_000115_210--Hb_000331_380 Hb_000115_210--Hb_000431_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.609647 18.2263 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.994537

CAGE analysis