Hb_000485_050

Information

Type -
Description -
Location Contig485: 114781-122544
Sequence    

Annotation

kegg
ID pvu:PHAVU_004G018900g
description hypothetical protein
nr
ID XP_012082034.1
description PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
swissprot
ID Q9SGH6
description Alpha-dioxygenase 1 OS=Arabidopsis thaliana GN=DOX1 PE=1 SV=1
trembl
ID V7C2I2
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G018900g PE=4 SV=1
Gene Ontology
ID GO:0004601
description alpha-dioxygenase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44968: 115094-122624
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000485_050 0.0 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
2 Hb_027472_250 0.0303322651 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
3 Hb_003925_010 0.0416860035 - - Polygalacturonase precursor, putative [Ricinus communis]
4 Hb_009620_080 0.0422288683 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
5 Hb_000028_090 0.0427522124 - - PREDICTED: uncharacterized protein LOC105135810 [Populus euphratica]
6 Hb_000307_160 0.0498819555 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
7 Hb_004162_150 0.061798411 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
8 Hb_000429_070 0.0621825491 - - hypothetical protein POPTR_0006s05480g [Populus trichocarpa]
9 Hb_001401_130 0.0713837256 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
10 Hb_000868_020 0.0720550163 - - -
11 Hb_000107_240 0.0735176124 - - organic anion transporter, putative [Ricinus communis]
12 Hb_000637_090 0.0759153469 - - hypothetical protein JCGZ_05877 [Jatropha curcas]
13 Hb_007677_010 0.0799441163 - - PREDICTED: uncharacterized protein LOC105641028 [Jatropha curcas]
14 Hb_012180_070 0.0834361597 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001386_070 0.0858485681 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Jatropha curcas]
16 Hb_010327_060 0.0861008795 - - hypothetical protein B456_001G246300 [Gossypium raimondii]
17 Hb_002757_040 0.0865309383 - - -
18 Hb_006249_010 0.0915415935 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
19 Hb_001956_170 0.0920957992 - - hypothetical protein POPTR_0001s24950g [Populus trichocarpa]
20 Hb_009470_010 0.0930935084 - - -

Gene co-expression network

sample Hb_000485_050 Hb_000485_050 Hb_027472_250 Hb_027472_250 Hb_000485_050--Hb_027472_250 Hb_003925_010 Hb_003925_010 Hb_000485_050--Hb_003925_010 Hb_009620_080 Hb_009620_080 Hb_000485_050--Hb_009620_080 Hb_000028_090 Hb_000028_090 Hb_000485_050--Hb_000028_090 Hb_000307_160 Hb_000307_160 Hb_000485_050--Hb_000307_160 Hb_004162_150 Hb_004162_150 Hb_000485_050--Hb_004162_150 Hb_027472_250--Hb_009620_080 Hb_027472_250--Hb_000028_090 Hb_027472_250--Hb_003925_010 Hb_002757_040 Hb_002757_040 Hb_027472_250--Hb_002757_040 Hb_000429_070 Hb_000429_070 Hb_027472_250--Hb_000429_070 Hb_000637_090 Hb_000637_090 Hb_003925_010--Hb_000637_090 Hb_007677_010 Hb_007677_010 Hb_003925_010--Hb_007677_010 Hb_003925_010--Hb_004162_150 Hb_003925_010--Hb_000429_070 Hb_009620_080--Hb_000028_090 Hb_009620_080--Hb_002757_040 Hb_010327_060 Hb_010327_060 Hb_009620_080--Hb_010327_060 Hb_009620_080--Hb_003925_010 Hb_000028_090--Hb_002757_040 Hb_000028_090--Hb_010327_060 Hb_000868_020 Hb_000868_020 Hb_000028_090--Hb_000868_020 Hb_000307_160--Hb_004162_150 Hb_000107_240 Hb_000107_240 Hb_000307_160--Hb_000107_240 Hb_000307_160--Hb_000868_020 Hb_000307_160--Hb_003925_010 Hb_006249_010 Hb_006249_010 Hb_000307_160--Hb_006249_010 Hb_015183_090 Hb_015183_090 Hb_004162_150--Hb_015183_090 Hb_000431_050 Hb_000431_050 Hb_004162_150--Hb_000431_050 Hb_000115_210 Hb_000115_210 Hb_004162_150--Hb_000115_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0153428 0.959379 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0780467

CAGE analysis