Hb_000429_070

Information

Type -
Description -
Location Contig429: 50764-50955
Sequence    

Annotation

kegg
ID pop:POPTR_0006s05480g
description hypothetical protein
nr
ID XP_006381023.1
description hypothetical protein POPTR_0006s05480g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5G5X6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s05480g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42091: 50685-51149
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000429_070 0.0 - - hypothetical protein POPTR_0006s05480g [Populus trichocarpa]
2 Hb_001401_130 0.0298017944 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
3 Hb_001386_070 0.0512378913 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Jatropha curcas]
4 Hb_012180_070 0.0603377494 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000485_050 0.0621825491 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
6 Hb_002186_190 0.0648213521 - - -
7 Hb_003925_010 0.0659757175 - - Polygalacturonase precursor, putative [Ricinus communis]
8 Hb_027472_250 0.0728611076 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
9 Hb_000107_240 0.075096039 - - organic anion transporter, putative [Ricinus communis]
10 Hb_000637_090 0.0802339321 - - hypothetical protein JCGZ_05877 [Jatropha curcas]
11 Hb_009470_010 0.0811999285 - - -
12 Hb_000012_340 0.0812239724 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
13 Hb_009620_080 0.0813940496 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
14 Hb_005539_330 0.0816458285 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]
15 Hb_004162_150 0.0818543583 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
16 Hb_001634_050 0.0825224858 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
17 Hb_000307_160 0.0833737105 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
18 Hb_003528_090 0.0837459516 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
19 Hb_007677_010 0.0839642468 - - PREDICTED: uncharacterized protein LOC105641028 [Jatropha curcas]
20 Hb_000028_090 0.0845330204 - - PREDICTED: uncharacterized protein LOC105135810 [Populus euphratica]

Gene co-expression network

sample Hb_000429_070 Hb_000429_070 Hb_001401_130 Hb_001401_130 Hb_000429_070--Hb_001401_130 Hb_001386_070 Hb_001386_070 Hb_000429_070--Hb_001386_070 Hb_012180_070 Hb_012180_070 Hb_000429_070--Hb_012180_070 Hb_000485_050 Hb_000485_050 Hb_000429_070--Hb_000485_050 Hb_002186_190 Hb_002186_190 Hb_000429_070--Hb_002186_190 Hb_003925_010 Hb_003925_010 Hb_000429_070--Hb_003925_010 Hb_001401_130--Hb_001386_070 Hb_001401_130--Hb_012180_070 Hb_003528_090 Hb_003528_090 Hb_001401_130--Hb_003528_090 Hb_001401_130--Hb_002186_190 Hb_000012_340 Hb_000012_340 Hb_001401_130--Hb_000012_340 Hb_001386_070--Hb_012180_070 Hb_001386_070--Hb_002186_190 Hb_001386_070--Hb_003925_010 Hb_001386_070--Hb_000485_050 Hb_001634_050 Hb_001634_050 Hb_012180_070--Hb_001634_050 Hb_005396_020 Hb_005396_020 Hb_012180_070--Hb_005396_020 Hb_000107_240 Hb_000107_240 Hb_012180_070--Hb_000107_240 Hb_027472_250 Hb_027472_250 Hb_000485_050--Hb_027472_250 Hb_000485_050--Hb_003925_010 Hb_009620_080 Hb_009620_080 Hb_000485_050--Hb_009620_080 Hb_000028_090 Hb_000028_090 Hb_000485_050--Hb_000028_090 Hb_000307_160 Hb_000307_160 Hb_000485_050--Hb_000307_160 Hb_004162_150 Hb_004162_150 Hb_000485_050--Hb_004162_150 Hb_000637_090 Hb_000637_090 Hb_002186_190--Hb_000637_090 Hb_002186_190--Hb_000012_340 Hb_007677_010 Hb_007677_010 Hb_002186_190--Hb_007677_010 Hb_009470_010 Hb_009470_010 Hb_002186_190--Hb_009470_010 Hb_003925_010--Hb_000637_090 Hb_003925_010--Hb_027472_250 Hb_003925_010--Hb_007677_010 Hb_003925_010--Hb_004162_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 19.263 54.0753 3953.61 3.48386 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 6.60677 266.74

CAGE analysis