Hb_000637_090

Information

Type -
Description -
Location Contig637: 113400-113935
Sequence    

Annotation

kegg
ID sly:101259918
description uncharacterized LOC101259918
nr
ID KDP20108.1
description hypothetical protein JCGZ_05877 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JBK2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05877 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51967: 113427-114006
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000637_090 0.0 - - hypothetical protein JCGZ_05877 [Jatropha curcas]
2 Hb_007677_010 0.0180815986 - - PREDICTED: uncharacterized protein LOC105641028 [Jatropha curcas]
3 Hb_001956_170 0.0299710404 - - hypothetical protein POPTR_0001s24950g [Populus trichocarpa]
4 Hb_009896_010 0.0534909446 - - ABC transporter G family member 15 [Morus notabilis]
5 Hb_003925_010 0.0553971244 - - Polygalacturonase precursor, putative [Ricinus communis]
6 Hb_009470_010 0.0564039574 - - -
7 Hb_002186_190 0.0721585749 - - -
8 Hb_000485_050 0.0759153469 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
9 Hb_000429_070 0.0802339321 - - hypothetical protein POPTR_0006s05480g [Populus trichocarpa]
10 Hb_004162_150 0.0820920986 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
11 Hb_053058_010 0.0879098806 - - conserved hypothetical protein [Ricinus communis]
12 Hb_008493_020 0.0896772128 - - linamarase [Manihot esculenta]
13 Hb_027472_250 0.0902706463 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
14 Hb_103942_010 0.0935414191 - - rab5A-like protein [Trichinella spiralis]
15 Hb_001401_130 0.0964450314 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
16 Hb_009620_080 0.1024720634 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
17 Hb_001634_070 0.1041981695 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000307_160 0.1044547794 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
19 Hb_001386_070 0.1044904415 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Jatropha curcas]
20 Hb_001597_040 0.1076407376 - - -

Gene co-expression network

sample Hb_000637_090 Hb_000637_090 Hb_007677_010 Hb_007677_010 Hb_000637_090--Hb_007677_010 Hb_001956_170 Hb_001956_170 Hb_000637_090--Hb_001956_170 Hb_009896_010 Hb_009896_010 Hb_000637_090--Hb_009896_010 Hb_003925_010 Hb_003925_010 Hb_000637_090--Hb_003925_010 Hb_009470_010 Hb_009470_010 Hb_000637_090--Hb_009470_010 Hb_002186_190 Hb_002186_190 Hb_000637_090--Hb_002186_190 Hb_007677_010--Hb_001956_170 Hb_007677_010--Hb_009470_010 Hb_007677_010--Hb_003925_010 Hb_007677_010--Hb_009896_010 Hb_007677_010--Hb_002186_190 Hb_001956_170--Hb_009896_010 Hb_001956_170--Hb_009470_010 Hb_001956_170--Hb_003925_010 Hb_001956_170--Hb_002186_190 Hb_008493_020 Hb_008493_020 Hb_009896_010--Hb_008493_020 Hb_053058_010 Hb_053058_010 Hb_009896_010--Hb_053058_010 Hb_001634_070 Hb_001634_070 Hb_009896_010--Hb_001634_070 Hb_000485_050 Hb_000485_050 Hb_003925_010--Hb_000485_050 Hb_027472_250 Hb_027472_250 Hb_003925_010--Hb_027472_250 Hb_004162_150 Hb_004162_150 Hb_003925_010--Hb_004162_150 Hb_000429_070 Hb_000429_070 Hb_003925_010--Hb_000429_070 Hb_009470_010--Hb_002186_190 Hb_009470_010--Hb_009896_010 Hb_009470_010--Hb_003925_010 Hb_002186_190--Hb_000429_070 Hb_001401_130 Hb_001401_130 Hb_002186_190--Hb_001401_130 Hb_000012_340 Hb_000012_340 Hb_002186_190--Hb_000012_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.21202 29.0347 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.14149

CAGE analysis