Hb_009896_010

Information

Type -
Description -
Location Contig9896: 1139-1342
Sequence    

Annotation

kegg
ID smo:SELMODRAFT_230259
description SmABCG40; ATP-binding cassette transporter
nr
ID XP_010105215.1
description ABC transporter G family member 15 [Morus notabilis]
swissprot
ID Q55DW4
description ABC transporter G family member 1 OS=Dictyostelium discoideum GN=abcG1 PE=3 SV=1
trembl
ID W9SFD1
description ABC transporter G family member 15 OS=Morus notabilis GN=L484_011272 PE=4 SV=1
Gene Ontology
ID GO:0005886
description abc transporter g family member 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009896_010 0.0 - - ABC transporter G family member 15 [Morus notabilis]
2 Hb_008493_020 0.0443528562 - - linamarase [Manihot esculenta]
3 Hb_053058_010 0.0497618784 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000637_090 0.0534909446 - - hypothetical protein JCGZ_05877 [Jatropha curcas]
5 Hb_007677_010 0.0641227503 - - PREDICTED: uncharacterized protein LOC105641028 [Jatropha curcas]
6 Hb_001956_170 0.0656613762 - - hypothetical protein POPTR_0001s24950g [Populus trichocarpa]
7 Hb_001634_070 0.06750992 - - conserved hypothetical protein [Ricinus communis]
8 Hb_103942_010 0.0710309124 - - rab5A-like protein [Trichinella spiralis]
9 Hb_009470_010 0.0770250399 - - -
10 Hb_060416_010 0.0836285093 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001597_040 0.0857310706 - - -
12 Hb_002186_190 0.0904076647 - - -
13 Hb_000203_130 0.0939127536 - - -
14 Hb_000103_210 0.0941148132 - - PREDICTED: protein lin-12-like isoform X1 [Populus euphratica]
15 Hb_001454_030 0.0941980467 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
16 Hb_001322_200 0.0945751519 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001817_050 0.0946521811 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
18 Hb_000431_040 0.0948409057 - - PREDICTED: uncharacterized protein LOC105635551 [Jatropha curcas]
19 Hb_002235_340 0.0950718228 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
20 Hb_153199_010 0.0979308316 - - -

Gene co-expression network

sample Hb_009896_010 Hb_009896_010 Hb_008493_020 Hb_008493_020 Hb_009896_010--Hb_008493_020 Hb_053058_010 Hb_053058_010 Hb_009896_010--Hb_053058_010 Hb_000637_090 Hb_000637_090 Hb_009896_010--Hb_000637_090 Hb_007677_010 Hb_007677_010 Hb_009896_010--Hb_007677_010 Hb_001956_170 Hb_001956_170 Hb_009896_010--Hb_001956_170 Hb_001634_070 Hb_001634_070 Hb_009896_010--Hb_001634_070 Hb_060416_010 Hb_060416_010 Hb_008493_020--Hb_060416_010 Hb_008493_020--Hb_053058_010 Hb_008493_020--Hb_001634_070 Hb_103942_010 Hb_103942_010 Hb_008493_020--Hb_103942_010 Hb_001322_200 Hb_001322_200 Hb_008493_020--Hb_001322_200 Hb_053058_010--Hb_001634_070 Hb_001597_040 Hb_001597_040 Hb_053058_010--Hb_001597_040 Hb_050786_010 Hb_050786_010 Hb_053058_010--Hb_050786_010 Hb_053058_010--Hb_060416_010 Hb_000637_090--Hb_007677_010 Hb_000637_090--Hb_001956_170 Hb_003925_010 Hb_003925_010 Hb_000637_090--Hb_003925_010 Hb_009470_010 Hb_009470_010 Hb_000637_090--Hb_009470_010 Hb_002186_190 Hb_002186_190 Hb_000637_090--Hb_002186_190 Hb_007677_010--Hb_001956_170 Hb_007677_010--Hb_009470_010 Hb_007677_010--Hb_003925_010 Hb_007677_010--Hb_002186_190 Hb_001956_170--Hb_009470_010 Hb_001956_170--Hb_003925_010 Hb_001956_170--Hb_002186_190 Hb_001634_070--Hb_060416_010 Hb_001634_070--Hb_001597_040 Hb_000027_020 Hb_000027_020 Hb_001634_070--Hb_000027_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.93268 204.056 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 3.67461

CAGE analysis