Hb_000027_020

Information

Type -
Description -
Location Contig27: 16397-16735
Sequence    

Annotation

kegg
ID rcu:RCOM_1311440
description Nonspecific lipid-transfer protein, putative
nr
ID XP_002527025.1
description Nonspecific lipid-transfer protein, putative [Ricinus communis]
swissprot
ID P86809
description Non-specific lipid-transfer protein 2 OS=Apium graveolens var. rapaceum PE=1 SV=1
trembl
ID B9SM06
description Nonspecific lipid-transfer protein, putative OS=Ricinus communis GN=RCOM_1311440 PE=4 SV=1
Gene Ontology
ID GO:0008233
description non-specific lipid-transfer protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28108: 16242-16723
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000027_020 0.0 - - Nonspecific lipid-transfer protein, putative [Ricinus communis]
2 Hb_005699_100 0.0589075863 - - hypothetical protein POPTR_0013s12390g [Populus trichocarpa]
3 Hb_118941_010 0.0626447644 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
4 Hb_000645_040 0.0638400533 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
5 Hb_002105_070 0.0714734944 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001634_070 0.071684113 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001322_200 0.0728617956 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000103_210 0.0739407668 - - PREDICTED: protein lin-12-like isoform X1 [Populus euphratica]
9 Hb_000203_130 0.0754639804 - - -
10 Hb_001277_390 0.0772808201 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
11 Hb_003092_010 0.0796782035 - - hypothetical protein POPTR_0025s00750g [Populus trichocarpa]
12 Hb_001817_050 0.0802445242 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
13 Hb_002235_340 0.081605618 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
14 Hb_000224_070 0.0826458013 - - -
15 Hb_060416_010 0.0827967526 - - conserved hypothetical protein [Ricinus communis]
16 Hb_116486_010 0.0845469984 - - MADS-box transcription factor, partial [Sapria himalayana]
17 Hb_000002_190 0.0861558274 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]
18 Hb_000003_520 0.0861558274 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
19 Hb_000005_170 0.0861558274 transcription factor TF Family: bHLH PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Jatropha curcas]
20 Hb_000009_230 0.0861558274 - - hypothetical protein POPTR_0007s12290g [Populus trichocarpa]

Gene co-expression network

sample Hb_000027_020 Hb_000027_020 Hb_005699_100 Hb_005699_100 Hb_000027_020--Hb_005699_100 Hb_118941_010 Hb_118941_010 Hb_000027_020--Hb_118941_010 Hb_000645_040 Hb_000645_040 Hb_000027_020--Hb_000645_040 Hb_002105_070 Hb_002105_070 Hb_000027_020--Hb_002105_070 Hb_001634_070 Hb_001634_070 Hb_000027_020--Hb_001634_070 Hb_001322_200 Hb_001322_200 Hb_000027_020--Hb_001322_200 Hb_000002_190 Hb_000002_190 Hb_005699_100--Hb_000002_190 Hb_000003_520 Hb_000003_520 Hb_005699_100--Hb_000003_520 Hb_000005_170 Hb_000005_170 Hb_005699_100--Hb_000005_170 Hb_000009_230 Hb_000009_230 Hb_005699_100--Hb_000009_230 Hb_000011_110 Hb_000011_110 Hb_005699_100--Hb_000011_110 Hb_000012_390 Hb_000012_390 Hb_005699_100--Hb_000012_390 Hb_001277_390 Hb_001277_390 Hb_118941_010--Hb_001277_390 Hb_000224_070 Hb_000224_070 Hb_118941_010--Hb_000224_070 Hb_153199_010 Hb_153199_010 Hb_118941_010--Hb_153199_010 Hb_007432_040 Hb_007432_040 Hb_118941_010--Hb_007432_040 Hb_004032_170 Hb_004032_170 Hb_118941_010--Hb_004032_170 Hb_000645_040--Hb_000224_070 Hb_001817_050 Hb_001817_050 Hb_000645_040--Hb_001817_050 Hb_002235_340 Hb_002235_340 Hb_000645_040--Hb_002235_340 Hb_000645_040--Hb_118941_010 Hb_000203_130 Hb_000203_130 Hb_000645_040--Hb_000203_130 Hb_116486_010 Hb_116486_010 Hb_002105_070--Hb_116486_010 Hb_005694_140 Hb_005694_140 Hb_002105_070--Hb_005694_140 Hb_000629_140 Hb_000629_140 Hb_002105_070--Hb_000629_140 Hb_002105_070--Hb_005699_100 Hb_002853_010 Hb_002853_010 Hb_002105_070--Hb_002853_010 Hb_008493_020 Hb_008493_020 Hb_001634_070--Hb_008493_020 Hb_060416_010 Hb_060416_010 Hb_001634_070--Hb_060416_010 Hb_009896_010 Hb_009896_010 Hb_001634_070--Hb_009896_010 Hb_053058_010 Hb_053058_010 Hb_001634_070--Hb_053058_010 Hb_001597_040 Hb_001597_040 Hb_001634_070--Hb_001597_040 Hb_000103_210 Hb_000103_210 Hb_001322_200--Hb_000103_210 Hb_001322_200--Hb_000203_130 Hb_001322_200--Hb_001817_050 Hb_001322_200--Hb_002235_340 Hb_001322_200--Hb_153199_010 Hb_003092_010 Hb_003092_010 Hb_001322_200--Hb_003092_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 12.5834 6.48417 1404.44 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.98181 0

CAGE analysis