Hb_004032_170

Information

Type -
Description -
Location Contig4032: 183420-183797
Sequence    

Annotation

kegg
ID pop:POPTR_0002s00290g
description POPTRDRAFT_412836; hypothetical protein
nr
ID XP_012073519.1
description PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
swissprot
ID Q9SGU2
description Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana GN=SAUR71 PE=2 SV=1
trembl
ID A0A067KKU1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07998 PE=4 SV=1
Gene Ontology
ID GO:0009733
description saur-like auxin-responsive protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_170 0.0 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
2 Hb_007432_040 0.0007580153 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 3-like [Jatropha curcas]
3 Hb_000530_080 0.001833196 - - PREDICTED: serine/threonine-protein kinase D6PKL2-like [Jatropha curcas]
4 Hb_000733_170 0.005195909 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
5 Hb_001591_020 0.0110889873 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
6 Hb_153199_010 0.0119020826 - - -
7 Hb_001892_040 0.0162478802 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
8 Hb_002235_340 0.0249544201 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
9 Hb_001817_050 0.0279402658 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
10 Hb_005976_030 0.0290875011 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
11 Hb_000258_010 0.0341139729 - - lipid transfer precursor protein [Hevea brasiliensis]
12 Hb_000203_130 0.0404256089 - - -
13 Hb_000103_210 0.0457453972 - - PREDICTED: protein lin-12-like isoform X1 [Populus euphratica]
14 Hb_069237_010 0.0463317853 - - -
15 Hb_001322_200 0.0505851875 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003729_040 0.0521273555 - - o-methyltransferase, putative [Ricinus communis]
17 Hb_000389_130 0.0521411074 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
18 Hb_000325_090 0.0562594132 transcription factor TF Family: bHLH PREDICTED: transcription factor PRE5-like [Gossypium raimondii]
19 Hb_130357_010 0.0562911635 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
20 Hb_118941_010 0.0638561665 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]

Gene co-expression network

sample Hb_004032_170 Hb_004032_170 Hb_007432_040 Hb_007432_040 Hb_004032_170--Hb_007432_040 Hb_000530_080 Hb_000530_080 Hb_004032_170--Hb_000530_080 Hb_000733_170 Hb_000733_170 Hb_004032_170--Hb_000733_170 Hb_001591_020 Hb_001591_020 Hb_004032_170--Hb_001591_020 Hb_153199_010 Hb_153199_010 Hb_004032_170--Hb_153199_010 Hb_001892_040 Hb_001892_040 Hb_004032_170--Hb_001892_040 Hb_007432_040--Hb_000530_080 Hb_007432_040--Hb_000733_170 Hb_007432_040--Hb_153199_010 Hb_007432_040--Hb_001591_020 Hb_007432_040--Hb_001892_040 Hb_000530_080--Hb_000733_170 Hb_000530_080--Hb_001591_020 Hb_000530_080--Hb_153199_010 Hb_000530_080--Hb_001892_040 Hb_000733_170--Hb_001591_020 Hb_000733_170--Hb_001892_040 Hb_000733_170--Hb_153199_010 Hb_001591_020--Hb_001892_040 Hb_005976_030 Hb_005976_030 Hb_001591_020--Hb_005976_030 Hb_002235_340 Hb_002235_340 Hb_153199_010--Hb_002235_340 Hb_001817_050 Hb_001817_050 Hb_153199_010--Hb_001817_050 Hb_001892_040--Hb_005976_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0801301 3.81039 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis