Hb_001591_020

Information

Type transcription factor
Description TF Family: bHLH
Location Contig1591: 46203-47613
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05210g
description POPTRDRAFT_661736; basic helix-loop-helix family protein
nr
ID XP_002317910.1
description basic helix-loop-helix family protein [Populus trichocarpa]
swissprot
ID Q8GWK7
description Transcription factor BEE 3 OS=Arabidopsis thaliana GN=BEE3 PE=2 SV=1
trembl
ID B9I2L2
description Basic helix-loop-helix family protein OS=Populus trichocarpa GN=POPTR_0012s05210g PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor bee 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001591_020 0.0 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
2 Hb_001892_040 0.0051655208 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
3 Hb_000733_170 0.0058956419 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
4 Hb_000530_080 0.0092572371 - - PREDICTED: serine/threonine-protein kinase D6PKL2-like [Jatropha curcas]
5 Hb_004032_170 0.0110889873 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
6 Hb_007432_040 0.0118462269 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 3-like [Jatropha curcas]
7 Hb_005976_030 0.0180372901 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
8 Hb_153199_010 0.0229659997 - - -
9 Hb_000258_010 0.0230817109 - - lipid transfer precursor protein [Hevea brasiliensis]
10 Hb_069237_010 0.035353778 - - -
11 Hb_002235_340 0.035955027 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
12 Hb_001817_050 0.0389203534 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
13 Hb_003729_040 0.041179694 - - o-methyltransferase, putative [Ricinus communis]
14 Hb_130357_010 0.045366907 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
15 Hb_000389_130 0.050133361 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
16 Hb_000325_090 0.0506303788 transcription factor TF Family: bHLH PREDICTED: transcription factor PRE5-like [Gossypium raimondii]
17 Hb_000203_130 0.0512919289 - - -
18 Hb_001347_020 0.0558523016 - - PREDICTED: cytochrome P450 86B1-like [Populus euphratica]
19 Hb_000103_210 0.0565480786 - - PREDICTED: protein lin-12-like isoform X1 [Populus euphratica]
20 Hb_000422_100 0.0571081315 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]

Gene co-expression network

sample Hb_001591_020 Hb_001591_020 Hb_001892_040 Hb_001892_040 Hb_001591_020--Hb_001892_040 Hb_000733_170 Hb_000733_170 Hb_001591_020--Hb_000733_170 Hb_000530_080 Hb_000530_080 Hb_001591_020--Hb_000530_080 Hb_004032_170 Hb_004032_170 Hb_001591_020--Hb_004032_170 Hb_007432_040 Hb_007432_040 Hb_001591_020--Hb_007432_040 Hb_005976_030 Hb_005976_030 Hb_001591_020--Hb_005976_030 Hb_001892_040--Hb_000733_170 Hb_001892_040--Hb_005976_030 Hb_001892_040--Hb_000530_080 Hb_001892_040--Hb_004032_170 Hb_001892_040--Hb_007432_040 Hb_000733_170--Hb_000530_080 Hb_000733_170--Hb_004032_170 Hb_000733_170--Hb_007432_040 Hb_153199_010 Hb_153199_010 Hb_000733_170--Hb_153199_010 Hb_000530_080--Hb_004032_170 Hb_000530_080--Hb_007432_040 Hb_000530_080--Hb_153199_010 Hb_004032_170--Hb_007432_040 Hb_004032_170--Hb_153199_010 Hb_007432_040--Hb_153199_010 Hb_000258_010 Hb_000258_010 Hb_005976_030--Hb_000258_010 Hb_069237_010 Hb_069237_010 Hb_005976_030--Hb_069237_010 Hb_003729_040 Hb_003729_040 Hb_005976_030--Hb_003729_040 Hb_005976_030--Hb_000733_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.022245 0.886856 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis