Hb_003729_040

Information

Type -
Description -
Location Contig3729: 60940-62252
Sequence    

Annotation

kegg
ID rcu:RCOM_1148460
description o-methyltransferase, putative (EC:2.1.1.104)
nr
ID XP_002527522.1
description o-methyltransferase, putative [Ricinus communis]
swissprot
ID Q9C9W3
description Putative caffeoyl-CoA O-methyltransferase At1g67980 OS=Arabidopsis thaliana GN=At1g67980 PE=2 SV=1
trembl
ID B9SNF3
description O-methyltransferase, putative OS=Ricinus communis GN=RCOM_1148460 PE=4 SV=1
Gene Ontology
ID GO:0005829
description caffeoyl- o-methyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003729_040 0.0 - - o-methyltransferase, putative [Ricinus communis]
2 Hb_130357_010 0.004223651 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
3 Hb_069237_010 0.0058671111 - - -
4 Hb_001347_020 0.0148231319 - - PREDICTED: cytochrome P450 86B1-like [Populus euphratica]
5 Hb_000422_100 0.016094659 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
6 Hb_000258_010 0.0181859677 - - lipid transfer precursor protein [Hevea brasiliensis]
7 Hb_111442_010 0.0189331321 desease resistance Gene Name: AAA_16 LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]
8 Hb_005976_030 0.0232322261 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
9 Hb_000628_090 0.0244233295 - - hypothetical protein B456_010G019400 [Gossypium raimondii]
10 Hb_054865_110 0.025684937 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000194_040 0.0261520169 - - carbonic anhydrase, putative [Ricinus communis]
12 Hb_001892_040 0.0360564654 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
13 Hb_001591_020 0.041179694 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
14 Hb_002601_030 0.0423856091 - - PREDICTED: uncharacterized protein LOC105634908 [Jatropha curcas]
15 Hb_118730_050 0.0464946102 - - RING/U-box superfamily protein isoform 4 [Theobroma cacao]
16 Hb_002783_290 0.0466241385 - - Uncharacterized protein TCM_034216 [Theobroma cacao]
17 Hb_000733_170 0.0470091655 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
18 Hb_000389_120 0.0491014202 - - hypothetical protein JCGZ_20066 [Jatropha curcas]
19 Hb_178734_010 0.0495841315 - - PREDICTED: uncharacterized protein LOC103331175 [Prunus mume]
20 Hb_000325_090 0.0496805668 transcription factor TF Family: bHLH PREDICTED: transcription factor PRE5-like [Gossypium raimondii]

Gene co-expression network

sample Hb_003729_040 Hb_003729_040 Hb_130357_010 Hb_130357_010 Hb_003729_040--Hb_130357_010 Hb_069237_010 Hb_069237_010 Hb_003729_040--Hb_069237_010 Hb_001347_020 Hb_001347_020 Hb_003729_040--Hb_001347_020 Hb_000422_100 Hb_000422_100 Hb_003729_040--Hb_000422_100 Hb_000258_010 Hb_000258_010 Hb_003729_040--Hb_000258_010 Hb_111442_010 Hb_111442_010 Hb_003729_040--Hb_111442_010 Hb_130357_010--Hb_069237_010 Hb_130357_010--Hb_001347_020 Hb_130357_010--Hb_000422_100 Hb_130357_010--Hb_111442_010 Hb_000628_090 Hb_000628_090 Hb_130357_010--Hb_000628_090 Hb_069237_010--Hb_000258_010 Hb_005976_030 Hb_005976_030 Hb_069237_010--Hb_005976_030 Hb_069237_010--Hb_001347_020 Hb_069237_010--Hb_000422_100 Hb_001347_020--Hb_000422_100 Hb_001347_020--Hb_111442_010 Hb_001347_020--Hb_000628_090 Hb_054865_110 Hb_054865_110 Hb_001347_020--Hb_054865_110 Hb_000194_040 Hb_000194_040 Hb_001347_020--Hb_000194_040 Hb_000422_100--Hb_111442_010 Hb_000422_100--Hb_000628_090 Hb_000422_100--Hb_054865_110 Hb_000422_100--Hb_000194_040 Hb_000258_010--Hb_005976_030 Hb_001892_040 Hb_001892_040 Hb_000258_010--Hb_001892_040 Hb_000258_010--Hb_130357_010 Hb_001591_020 Hb_001591_020 Hb_000258_010--Hb_001591_020 Hb_111442_010--Hb_000628_090 Hb_111442_010--Hb_054865_110 Hb_111442_010--Hb_000194_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0326202 0.749287 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis