Hb_000422_100

Information

Type -
Description -
Location Contig422: 132530-133906
Sequence    

Annotation

kegg
ID pop:POPTR_0012s13720g
description hypothetical protein
nr
ID XP_011012882.1
description PREDICTED: TMV resistance protein N-like [Populus euphratica]
swissprot
ID -
description -
trembl
ID U5FUV8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s13720g PE=4 SV=1
Gene Ontology
ID GO:0005488
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000422_100 0.0 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
2 Hb_001347_020 0.0012726031 - - PREDICTED: cytochrome P450 86B1-like [Populus euphratica]
3 Hb_111442_010 0.0028414954 desease resistance Gene Name: AAA_16 LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]
4 Hb_000628_090 0.0083398836 - - hypothetical protein B456_010G019400 [Gossypium raimondii]
5 Hb_054865_110 0.0096037944 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000194_040 0.010071766 - - carbonic anhydrase, putative [Ricinus communis]
7 Hb_130357_010 0.0118739845 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
8 Hb_003729_040 0.016094659 - - o-methyltransferase, putative [Ricinus communis]
9 Hb_069237_010 0.0219538281 - - -
10 Hb_118730_050 0.0304719229 - - RING/U-box superfamily protein isoform 4 [Theobroma cacao]
11 Hb_002783_290 0.0306019259 - - Uncharacterized protein TCM_034216 [Theobroma cacao]
12 Hb_002601_030 0.0319934055 - - PREDICTED: uncharacterized protein LOC105634908 [Jatropha curcas]
13 Hb_178734_010 0.0335731051 - - PREDICTED: uncharacterized protein LOC103331175 [Prunus mume]
14 Hb_000258_010 0.0342403801 - - lipid transfer precursor protein [Hevea brasiliensis]
15 Hb_049573_010 0.037556834 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000389_120 0.0382409878 - - hypothetical protein JCGZ_20066 [Jatropha curcas]
17 Hb_005976_030 0.0392667649 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
18 Hb_003874_030 0.0426501455 - - hypothetical protein JCGZ_00004 [Jatropha curcas]
19 Hb_005914_190 0.04979381 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
20 Hb_001892_040 0.0520211867 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]

Gene co-expression network

sample Hb_000422_100 Hb_000422_100 Hb_001347_020 Hb_001347_020 Hb_000422_100--Hb_001347_020 Hb_111442_010 Hb_111442_010 Hb_000422_100--Hb_111442_010 Hb_000628_090 Hb_000628_090 Hb_000422_100--Hb_000628_090 Hb_054865_110 Hb_054865_110 Hb_000422_100--Hb_054865_110 Hb_000194_040 Hb_000194_040 Hb_000422_100--Hb_000194_040 Hb_130357_010 Hb_130357_010 Hb_000422_100--Hb_130357_010 Hb_001347_020--Hb_111442_010 Hb_001347_020--Hb_000628_090 Hb_001347_020--Hb_130357_010 Hb_001347_020--Hb_054865_110 Hb_001347_020--Hb_000194_040 Hb_111442_010--Hb_000628_090 Hb_111442_010--Hb_054865_110 Hb_111442_010--Hb_000194_040 Hb_111442_010--Hb_130357_010 Hb_000628_090--Hb_054865_110 Hb_000628_090--Hb_000194_040 Hb_000628_090--Hb_130357_010 Hb_054865_110--Hb_000194_040 Hb_118730_050 Hb_118730_050 Hb_054865_110--Hb_118730_050 Hb_000194_040--Hb_118730_050 Hb_003729_040 Hb_003729_040 Hb_130357_010--Hb_003729_040 Hb_069237_010 Hb_069237_010 Hb_130357_010--Hb_069237_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0219303 0.419976 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis