Hb_000194_040

Information

Type -
Description -
Location Contig194: 133780-134647
Sequence    

Annotation

kegg
ID rcu:RCOM_1510600
description carbonic anhydrase, putative (EC:4.2.1.1)
nr
ID XP_002511401.1
description carbonic anhydrase, putative [Ricinus communis]
swissprot
ID P16016
description Carbonic anhydrase, chloroplastic OS=Spinacia oleracea PE=1 SV=2
trembl
ID B9RB26
description Carbonic anhydrase OS=Ricinus communis GN=RCOM_1510600 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19366: 132479-132898 , PASA_asmbl_19367: 133370-133870
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000194_040 0.0 - - carbonic anhydrase, putative [Ricinus communis]
2 Hb_054865_110 0.0004681121 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000628_090 0.001732336 - - hypothetical protein B456_010G019400 [Gossypium raimondii]
4 Hb_111442_010 0.0072309282 desease resistance Gene Name: AAA_16 LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]
5 Hb_000422_100 0.010071766 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
6 Hb_001347_020 0.0113439003 - - PREDICTED: cytochrome P450 86B1-like [Populus euphratica]
7 Hb_118730_050 0.0204182522 - - RING/U-box superfamily protein isoform 4 [Theobroma cacao]
8 Hb_002783_290 0.0205484401 - - Uncharacterized protein TCM_034216 [Theobroma cacao]
9 Hb_130357_010 0.0219369674 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
10 Hb_178734_010 0.0235240668 - - PREDICTED: uncharacterized protein LOC103331175 [Prunus mume]
11 Hb_003729_040 0.0261520169 - - o-methyltransferase, putative [Ricinus communis]
12 Hb_049573_010 0.0275144051 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002601_030 0.0283223864 - - PREDICTED: uncharacterized protein LOC105634908 [Jatropha curcas]
14 Hb_069237_010 0.0320010342 - - -
15 Hb_003874_030 0.0326171991 - - hypothetical protein JCGZ_00004 [Jatropha curcas]
16 Hb_000389_120 0.0336191968 - - hypothetical protein JCGZ_20066 [Jatropha curcas]
17 Hb_005914_190 0.0397760011 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
18 Hb_010261_070 0.0434364647 - - hypothetical protein B456_009G094800 [Gossypium raimondii]
19 Hb_000258_010 0.0442567616 - - lipid transfer precursor protein [Hevea brasiliensis]
20 Hb_099538_020 0.0457203467 - - hypothetical protein POPTR_0010s12650g [Populus trichocarpa]

Gene co-expression network

sample Hb_000194_040 Hb_000194_040 Hb_054865_110 Hb_054865_110 Hb_000194_040--Hb_054865_110 Hb_000628_090 Hb_000628_090 Hb_000194_040--Hb_000628_090 Hb_111442_010 Hb_111442_010 Hb_000194_040--Hb_111442_010 Hb_000422_100 Hb_000422_100 Hb_000194_040--Hb_000422_100 Hb_001347_020 Hb_001347_020 Hb_000194_040--Hb_001347_020 Hb_118730_050 Hb_118730_050 Hb_000194_040--Hb_118730_050 Hb_054865_110--Hb_000628_090 Hb_054865_110--Hb_111442_010 Hb_054865_110--Hb_000422_100 Hb_054865_110--Hb_001347_020 Hb_054865_110--Hb_118730_050 Hb_000628_090--Hb_111442_010 Hb_000628_090--Hb_000422_100 Hb_000628_090--Hb_001347_020 Hb_130357_010 Hb_130357_010 Hb_000628_090--Hb_130357_010 Hb_111442_010--Hb_000422_100 Hb_111442_010--Hb_001347_020 Hb_111442_010--Hb_130357_010 Hb_000422_100--Hb_001347_020 Hb_000422_100--Hb_130357_010 Hb_001347_020--Hb_130357_010 Hb_002783_290 Hb_002783_290 Hb_118730_050--Hb_002783_290 Hb_178734_010 Hb_178734_010 Hb_118730_050--Hb_178734_010 Hb_049573_010 Hb_049573_010 Hb_118730_050--Hb_049573_010 Hb_003874_030 Hb_003874_030 Hb_118730_050--Hb_003874_030 Hb_005914_190 Hb_005914_190 Hb_118730_050--Hb_005914_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.345039 5.93936 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis