Hb_005914_190

Information

Type -
Description -
Location Contig5914: 104159-104905
Sequence    

Annotation

kegg
ID pop:POPTR_0010s07700g
description POPTRDRAFT_833417; acid phosphatase class B family protein
nr
ID XP_011041430.1
description PREDICTED: acid phosphatase 1-like [Populus euphratica]
swissprot
ID P27061
description Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1
trembl
ID B9HST4
description Acid phosphatase class B family protein OS=Populus trichocarpa GN=POPTR_0010s07700g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005914_190 0.0 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
2 Hb_010261_070 0.0036749791 - - hypothetical protein B456_009G094800 [Gossypium raimondii]
3 Hb_099538_020 0.0059689884 - - hypothetical protein POPTR_0010s12650g [Populus trichocarpa]
4 Hb_003874_030 0.0071808236 - - hypothetical protein JCGZ_00004 [Jatropha curcas]
5 Hb_002289_160 0.0117141411 - - Polygalacturonase precursor, putative [Ricinus communis]
6 Hb_027136_030 0.0121462896 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
7 Hb_049573_010 0.0122939081 - - conserved hypothetical protein [Ricinus communis]
8 Hb_149495_010 0.0126418094 - - putative starch phosphorylase, partial [Sorghum bicolor]
9 Hb_178734_010 0.0162889963 - - PREDICTED: uncharacterized protein LOC103331175 [Prunus mume]
10 Hb_002783_290 0.0192662103 - - Uncharacterized protein TCM_034216 [Theobroma cacao]
11 Hb_118730_050 0.0193964287 - - RING/U-box superfamily protein isoform 4 [Theobroma cacao]
12 Hb_001922_140 0.0245758723 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003424_040 0.0260121677 - - PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
14 Hb_157950_010 0.0273050239 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]
15 Hb_073680_010 0.0274177907 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
16 Hb_005081_050 0.0292687897 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Prunus mume]
17 Hb_000087_110 0.0360806663 - - conserved hypothetical protein [Ricinus communis]
18 Hb_093541_010 0.0380403527 - - conserved hypothetical protein [Ricinus communis]
19 Hb_101724_010 0.0390828052 - - glutamate receptor family protein [Populus trichocarpa]
20 Hb_000194_040 0.0397760011 - - carbonic anhydrase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005914_190 Hb_005914_190 Hb_010261_070 Hb_010261_070 Hb_005914_190--Hb_010261_070 Hb_099538_020 Hb_099538_020 Hb_005914_190--Hb_099538_020 Hb_003874_030 Hb_003874_030 Hb_005914_190--Hb_003874_030 Hb_002289_160 Hb_002289_160 Hb_005914_190--Hb_002289_160 Hb_027136_030 Hb_027136_030 Hb_005914_190--Hb_027136_030 Hb_049573_010 Hb_049573_010 Hb_005914_190--Hb_049573_010 Hb_010261_070--Hb_099538_020 Hb_010261_070--Hb_002289_160 Hb_010261_070--Hb_027136_030 Hb_149495_010 Hb_149495_010 Hb_010261_070--Hb_149495_010 Hb_010261_070--Hb_003874_030 Hb_099538_020--Hb_002289_160 Hb_099538_020--Hb_027136_030 Hb_099538_020--Hb_149495_010 Hb_099538_020--Hb_003874_030 Hb_003874_030--Hb_049573_010 Hb_178734_010 Hb_178734_010 Hb_003874_030--Hb_178734_010 Hb_002783_290 Hb_002783_290 Hb_003874_030--Hb_002783_290 Hb_118730_050 Hb_118730_050 Hb_003874_030--Hb_118730_050 Hb_002289_160--Hb_027136_030 Hb_002289_160--Hb_149495_010 Hb_001922_140 Hb_001922_140 Hb_002289_160--Hb_001922_140 Hb_027136_030--Hb_149495_010 Hb_027136_030--Hb_001922_140 Hb_049573_010--Hb_178734_010 Hb_049573_010--Hb_002783_290 Hb_049573_010--Hb_118730_050 Hb_049573_010--Hb_010261_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0310189 0.365678 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis