Hb_099538_020

Information

Type -
Description -
Location Contig99538: 10566-14788
Sequence    

Annotation

kegg
ID pop:POPTR_0010s12650g
description POPTRDRAFT_81148; hypothetical protein
nr
ID XP_002314824.1
description hypothetical protein POPTR_0010s12650g [Populus trichocarpa]
swissprot
ID Q2QYH7
description Cytochrome P450 714C2 OS=Oryza sativa subsp. japonica GN=CYP714C2 PE=2 SV=1
trembl
ID B9HW99
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s12650g PE=3 SV=1
Gene Ontology
ID GO:0016491
description cytochrome p450 714c2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64823: 13209-13322
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_099538_020 0.0 - - hypothetical protein POPTR_0010s12650g [Populus trichocarpa]
2 Hb_010261_070 0.00229411 - - hypothetical protein B456_009G094800 [Gossypium raimondii]
3 Hb_002289_160 0.0057459387 - - Polygalacturonase precursor, putative [Ricinus communis]
4 Hb_005914_190 0.0059689884 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
5 Hb_027136_030 0.0061781764 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
6 Hb_149495_010 0.0066738037 - - putative starch phosphorylase, partial [Sorghum bicolor]
7 Hb_003874_030 0.0131486484 - - hypothetical protein JCGZ_00004 [Jatropha curcas]
8 Hb_049573_010 0.0182600889 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001922_140 0.0186120355 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003424_040 0.0200490295 - - PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
11 Hb_157950_010 0.0213425492 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]
12 Hb_073680_010 0.0214553753 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
13 Hb_178734_010 0.0222533987 - - PREDICTED: uncharacterized protein LOC103331175 [Prunus mume]
14 Hb_005081_050 0.0233073846 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Prunus mume]
15 Hb_002783_290 0.0252289959 - - Uncharacterized protein TCM_034216 [Theobroma cacao]
16 Hb_118730_050 0.0253591378 - - RING/U-box superfamily protein isoform 4 [Theobroma cacao]
17 Hb_000087_110 0.0301235336 - - conserved hypothetical protein [Ricinus communis]
18 Hb_093541_010 0.0320846057 - - conserved hypothetical protein [Ricinus communis]
19 Hb_101724_010 0.033127823 - - glutamate receptor family protein [Populus trichocarpa]
20 Hb_006198_160 0.0383836063 - - hypothetical protein POPTR_0002s24290g [Populus trichocarpa]

Gene co-expression network

sample Hb_099538_020 Hb_099538_020 Hb_010261_070 Hb_010261_070 Hb_099538_020--Hb_010261_070 Hb_002289_160 Hb_002289_160 Hb_099538_020--Hb_002289_160 Hb_005914_190 Hb_005914_190 Hb_099538_020--Hb_005914_190 Hb_027136_030 Hb_027136_030 Hb_099538_020--Hb_027136_030 Hb_149495_010 Hb_149495_010 Hb_099538_020--Hb_149495_010 Hb_003874_030 Hb_003874_030 Hb_099538_020--Hb_003874_030 Hb_010261_070--Hb_005914_190 Hb_010261_070--Hb_002289_160 Hb_010261_070--Hb_027136_030 Hb_010261_070--Hb_149495_010 Hb_010261_070--Hb_003874_030 Hb_002289_160--Hb_027136_030 Hb_002289_160--Hb_149495_010 Hb_002289_160--Hb_005914_190 Hb_001922_140 Hb_001922_140 Hb_002289_160--Hb_001922_140 Hb_005914_190--Hb_003874_030 Hb_005914_190--Hb_027136_030 Hb_049573_010 Hb_049573_010 Hb_005914_190--Hb_049573_010 Hb_027136_030--Hb_149495_010 Hb_027136_030--Hb_001922_140 Hb_149495_010--Hb_001922_140 Hb_149495_010--Hb_005914_190 Hb_003874_030--Hb_049573_010 Hb_178734_010 Hb_178734_010 Hb_003874_030--Hb_178734_010 Hb_002783_290 Hb_002783_290 Hb_003874_030--Hb_002783_290 Hb_118730_050 Hb_118730_050 Hb_003874_030--Hb_118730_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0397371 0.444813 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis